Jimenez S S - OmicsDI

Show results for

Unknown (6074)
Proteomics (138)
Transcriptomics (46)
Genomics (25)
Metabolomics (9)
Genomic (1)

Organisms

Homo sapiens (119)
Mus musculus (34)
Mycobacterium marinum ATCC BAA-535 (5)
Helicobacter pylori (4)
Drosophila melanogaster (3)
Oryctolagus cuniculus (3)
Saccharomyces cerevisiae (3)
Arabidopsis thaliana (3)
Rattus norvegicus (2)
Bacteria (2)
Toxoplasma gondii RH (2)
Solea senegalensis (1)
Macaca mulatta (1)
Drosophila simulans (1)
Zea mays (1)
Paracoccidioides brasiliensis (1)
Danio rerio (1)
Acidianus brierleyi (1)
Architeuthis dux (1)
Bos taurus (1)
Escherichia coli (1)
Gallus gallus (1)
Histomonas meleagridis (1)
Micromonas commoda (1)
Mycobacterium tuberculosis (1)
Oryctolagus cuniculus cuniculus (1)
Stramonita haemastoma (1)

Organisms

Prunus persica var. persica (1)

Repository

pride (131)
biostudies-arrayexpress (49)
EGA (16)
MetaboLights (9)
MassIVE (6)
ENA (6)
dbGaP (1)
PAXDB (1)

Tissue

Epithelial cell (22)
Cell culture (18)
Colon (9)
Blood cell (7)
Blood (6)
Brain (6)
Kidney (5)
Bone marrow (4)
Bone marrow cell (4)
Macrophage (4)
Pancreas (4)
Blood plasma (3)
Heart (3)
Liver (3)
Lung (3)
Melanocyte (3)
Pancreatic ductal cell (3)
Platelet (3)
Skin (3)
Astrocyte (2)
Blood platelet (2)
Colon epithelial cell (2)
Colonic epithelium (2)
Kidney proximal straight tubule epithelial cell (2)
Monocyte (2)
Pancreatic ductal adenocarcinoma cell (2)
Sperm (2)
Spermatozoon (2)
T cell (2)
Urine (2)

Disease

Colon cancer (14)
Acute leukemia (9)
Breast cancer (6)
Tuberculosis (5)
Melanoma (4)
Cardiovascular system disease (3)
Infertility (3)
Non-small cell lung carcinoma (3)
Pancreatic ductal adenocarcinoma (3)
Pancreatic ductal carcinoma (3)
Renal cell carcinoma (3)
Aortic aneurysm (2)
Cholangiocarcinoma (2)
Glioblastoma (2)
Hepatocellular carcinoma (2)
Pancreatic cancer (2)
Cirrhosis (1)
Acute myeloid leukemia (1)
Alzheimer's disease (1)
Anus cancer (1)
Atrial fibrillation (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
COVID-19 (1)
Cancer (1)
Collagen disease (1)
Esophageal cancer (1)
Fanconi anemia (1)
Head and neck squamous cell carcinoma (1)
Hypertension (1)

Technology Type

Mass Spectrometry (131)
Shotgun proteomics (90)
Data-dependent acquisition (15)
Affinity purification coupled with mass spectrometry proteomics (12)
Bottom-up proteomics (12)
Mass spectrometry (7)
Data-independent acquisition (7)
Gel-based experiment (5)
NMR spectroscopy (2)
SWATH MS (2)
Top-down proteomics (2)
Affymetrix 6.0, Illumina Genome Analyzer II (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA, NextSeq 500 (1)
Mass spectrometry assay (1)
All-ion fragmentation (1)

Instrument Platform

Q Exactive (5)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 4000 (3)
Liquid Chromatography MS - negative - reverse phase (2)
Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 (1)
GeneTitan MultiChannel System (1)
GeneChip Clariom S mouse array cartridge and Affymetrix GeneTitan MultiChannel System (1)
GeneChip Pico Kit (Affymetrix/ThermoFisher) (1)
ReliaPrep RNA Miniprep System (Promega) (1)
Adipocyte Progenitor Isolation Kit (Miltenyi Biotec) (1)
HPC services from the University of Granada (http://alhambra.ugr.es) (1)
Illumina MouseWG-6 v2 Expression BeadChip (1)
AB SOLiD 4 System (1)
NA (1)
N/A (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Impact (1)
6540 Q-TOF LC/MS (Agilent) (1)
Bruker (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - positive - reversed-phase-chromatography (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2021 (19)
2024 (18)
2022 (18)
2025 (15)
2026 (14)
2020 (14)
2016 (13)
2019 (13)
2023 (12)
2018 (11)
2014 (9)
2010 (8)
2015 (6)
2013 (5)
2007 (5)
2017 (5)
2012 (3)
2011 (3)
2009 (3)
2008 (1)
2006 (1)

UNIPROT ID/AC

35KD_MYCTU (1)
6PGL_MYCTU (1)
83332.Rv1370c (1)
83332.Rv1757c (1)
83332.Rv1763 (1)
83332.Rv2105 (1)
83332.Rv2168c (1)
83332.Rv2278 (1)
83332.Rv2354 (1)
83332.Rv2480c (1)
83332.Rv2648 (1)
83332.Rv2815c (1)
83332.Rv3117 (1)
83332.Rv3118 (1)
83332.Rv3184 (1)
83332.Rv3186 (1)
83332.Rv3325 (1)
83332.Rv3381c (1)
83332.Rv3474 (1)
83332.Rv3619c (1)
A85A_MYCTU (1)
A85B_MYCTU (1)
A85C_MYCTU (1)
ACCD_MYCTU (1)
ACDC_MYCTU (1)
ACDH_MYCTU (1)
ACDP_MYCTU (1)
ACEA_MYCTU (1)
ACG_MYCTU (1)
ACKA_MYCTU (1)

CHEBI ID

CHEBI:1148 (2)
CHEBI:15366 (2)
CHEBI:16449 (2)
CHEBI:17234 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:27266 (2)
CHEBI:78320 (2)
CHEBI:10017 (1)
CHEBI:107634 (1)
CHEBI:107639 (1)
CHEBI:111284 (1)
CHEBI:113529 (1)
CHEBI:122 (1)
CHEBI:131427 (1)
CHEBI:131428 (1)
CHEBI:131430 (1)
CHEBI:131439 (1)
CHEBI:131440 (1)
CHEBI:131775 (1)
CHEBI:131988 (1)
CHEBI:131993 (1)
CHEBI:132009 (1)
CHEBI:132032 (1)
CHEBI:132033 (1)
CHEBI:132034 (1)
CHEBI:132035 (1)
CHEBI:132036 (1)
CHEBI:132037 (1)

Metabolite Name

Acetate (2)
(Nω-L-arginino)succinic acid (1)
1,3,6-tri-O-methylarthothelin (1)
1,6-Dihydroxy-3,8-dimethylxanthone (1)
2,4-Di-O-methylolivetonide (1)
2,4-Dichloro-1,3,6-tri-O-methylnorlichexanthone (1)
2,4-Dichlorolichexanthone (1)
2,4-Dichloronorlichexanthone (1)
2,5,7-trichlorolichexanthone (1)
2,5-Dichloro-1,3,6-tri-O-methylnorlichexanthone (1)
2,5-Dichlorolichexanthone (1)
2,5-Dichloronorlichexanthone (1)
2,8-Dimethyl-5,7-dimethoxychromone (1)
2-Chloro-6-O-methylnorlichexanthone (1)
2-Hydroxybutyrate (1)
2-hexanoyl-1,3,8-trihydroxy-6-methoxy-anthraquinone (1)
2-hydroxy-butyrate (1)
2-methyl-butyrate (1)
2-phenylacetamide (1)
3-Hydroxybutyrate (1)
3-Hydroxyisobutyrate (1)
3-O-Sulfogalactosylceramide (d18:1/24:1(15Z)) (1)
3-methyl-2-oxovaleric acid (1)
4-Chloro-6-O-methylnorlichexanthone (1)
4-Chlorolichexanthone (1)
4-Chloronorlichexanthone (1)
4-hydroxybenzaldehyde (1)
4-methyl-2-oxopentanoic acid (1)
5'-Deoxy-5'-(methylthio)adenosine (1)
5,7-Dihydroxy-2,6,8-trimethylchromone (1)

First Public Date

2024 (2)
2022 (2)
2025 (1)
2014 (1)

Study type

Transcription profiling by array (28)
RNA-seq of coding RNA (6)
Comparative genomic hybridization by array (3)
ChIP-seq (3)
RNA-seq of coding RNA from single cells (3)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (836)
2025 (787)
2023 (757)
2021 (745)
2024 (652)
2020 (501)
2019 (368)
2018 (250)
2017 (240)
2016 (202)
2015 (160)
2026 (133)
2014 (124)
2013 (86)
2012 (69)
2010 (55)
2009 (53)
2011 (43)
2008 (17)
2007 (16)
2006 (12)
2005 (4)
2004 (3)
2002 (3)
2000 (2)
2003 (1)
2001 (1)
1998 (1)
1996 (1)

Lab affiliation

Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (39)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (26)
AmsterdamUMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, The Netherlands (3)
Departament de Bioquímica i Biologia Molecular Universitat de Valencia (2)
Instituto de Ciencia y Tecnologia Animal Universitat Politècnica de València Valencia, Spain (2)
OncoProteomics Laboratory, Dept of Medical Oncology, Amsterdam University Medical Center, Amsterdam, The Netherlands (2)
OncoProteomics Laboratory, Dept of Medical Oncology, Amsterdam University Medical Centers, Amsterdam, The Netherlands (2)
Roswell Park Cancer Center Buffalo, NY, USA (2)
UCSF (2)
Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom (1)
Breast Cancer Clinical Research Unit, CNIO, Spanish National Cancer Research Centre, Spain (1)
CIC bioGUNE Proteomics Platform, Bizkaia Tech. Park. Build 800 (1)
Cancer Biomarkers Research Group Health Research Institute-Fundacion Jimenez Diaz (IIS-FJD, UAM) Madrid, Spain (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Centre de Recherche en Cancérologie de Marseille, CRCM Inserm UMR1068, CNRS UMR7258, Aix Marseille Université U105, Institut Paoli Calmettes 27 Boulevard Leï Roure CS30059 13273 Marseille Cedex 09 France (1)
Clinic for Poultry and Fish Medicine University of Veterinary Medicine Vienna Austria (1)
Connie Jimenez, OncoProteomics Laboratory, Dept of Medical Oncology, Amsterdam University Medical Centers, Amsterdam, The Netherlands (1)
Department of Biochemistry and Molecular Biology Department of Urology, Mayo clinic, Rochester MN, US (1)
Department of Chemistry, University of Cambridge, Cambridge, UK (1)
Department of Experimental Parasitology LMU München Lena-Christ-Str. 48 82152 Planegg-Martinsried Telefon: +49 (0) 89 2180 - 3622 Fax: +49 (0) 89 2180 - 3623 E-Mail: markus.meissner@lmu.de (1)
Department of Experimental Parasitology LMU München Lena-Christ-Str. 48 82152 Planegg-Martinsried Telefon: +49 (0) 89 2180 - 3622 Fax: +49 (0) 89 2180 - 3623 E-Mail: markus.meissner@lmu.de (1)
Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia. Pok Man Leung, pok.leung@monash.edu, Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia Ralf B. Schittenhelm, ralf.schittenhelm@monash.edu, Monash Proteomics and Metabolomics Facility and Department of Biochemistry, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia (1)
Department of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR USA (1)
Department of Plant Molecular Biology University of Lausanne Lausanne, Switzerland (1)
Department of Plant Molecular Biology, University of Lausanne, 1015 Lausanne, Switzerland (1)
Dept. CMIM y Química Inorgánica-INBIO, Facultad de Ciencias, Universidad de Cádiz (1)
Division of Cardiology, Department of Medicine; Columbia University, Vagelos College of Physicians and Surgeons, 622 West 168th Street, New York, NY 10032. Department of Pharmacology and Molecular Signaling, Columbia University, Vagelos College of Physicians and Surgeons (1)
German Cancer Research Center Heidelberg, Division: Systems Biology of Signal Transduction (1)
German Cancer Research Center Heidelberg, Division: Systems Biology of Singal Transduction (1)
Head of the Department, Proteomics Core Facility (1)

6293 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets