Joel M M - OmicsDI

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Unknown (138)
Transcriptomics (105)
Proteomics (80)
Genomics (40)
Multiomics (15)
Metabolomics (12)
Models (5)
Genomic (5)

Organisms

Homo sapiens (113)
Aerococcus urinae NBRC 15544 = CCUG 36881 (44)
Andropogon gerardi (44)
Bacteria (44)
Bartonella quintana JK 31 (44)
Mus musculus (22)
Rattus norvegicus (7)
Saccharomyces cerevisiae (5)
Mus musculus x Mus spretus (3)
Gallus gallus (3)
Schmidtea mediterranea (2)
Pan troglodytes (2)
Mycobacterium tuberculosis CDC1551 (2)
Caenorhabditis elegans (2)
Neisseria gonorrhoeae (1)
Chordata (1)
Saccharomyces mikatae (1)
Strongylocentrotus purpuratus (1)
Schizosaccharomyces pombe (1)
Mycobacterium tuberculosis H37Rv (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Canis lupus familiaris (1)
Escherichia coli (1)
Macaca fascicularis (1)
Oryctolagus cuniculus (1)
Pseudomonas putida KT2440 (1)
Rhodotorula toruloides (1)

Organisms

Homo sapiens (2)

Repository

biostudies-arrayexpress (118)
pride (44)
EGA (25)
PeptideAtlas (14)
MassIVE (12)
MetaboLights (10)
PanoramaPublic (7)
BioModels (5)
dbGaP (5)
geo (2)
GNPS (2)
PAXDB (2)
ENA (2)

Tissue

Others (11)
Cell culture (8)
Brain (4)
Epithelial cell (4)
Heart (4)
Plasma Non-glyco (3)
Kidney (3)
Fibroblast (2)
Salivary gland (2)
Blood serum (1)
Colon (1)
Early embryonic cell (1)
Embryo (1)
Hair (1)
Hair shaft (1)
Hemolymph (1)
Hepatocyte (1)
HiPSC cell (1)
Liver (1)
Malignant cell (1)
Melanocyte (1)
Monocyte (1)
Pancreas (1)
Primary cell (1)
Saliva (1)
Skeletal muscle (1)
Stem cell (1)
Testis (1)
Trunk (1)
Type I muscle cell (1)

Disease

Melanoma (2)
Osteosarcoma (1)
Multiple myeloma (1)
Normal (1)
Acute leukemia (1)
Brain cancer (1)
Breast cancer (1)
Colon cancer (1)
Lung adenocarcinoma (1)
Male infertility (1)
Neurodegenerative disease (1)
Pancreatic ductal adenocarcinoma (1)
Prion disease (1)

Technology Type

Mass Spectrometry (44)
Shotgun proteomics (24)
Bottom-up proteomics (13)
Mass spectrometry (8)
Data-dependent acquisition (6)
Mass spectrometry assay (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Affymetrix 6.0 (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (15)
Illumina NovaSeq 6000 (2)
LTQ FT (2)
Orbitrap Fusion (2)
Orbitrap Fusion Lumos (2)
Q Exactive (2)
Q Exactive Plus (2)
Gas Chromatography MS - (2)
Axon 4000B scanner (1)
G2500A Hewlett Packard (1)
Other (1)
Illumina Genome Analyzer IIx (1)
418 [Affymetrix] (1)
Affymetrix Fluidics Station 400 (1)
KingFisher Flex (1)
GentleMACS™ Dissociator (1)
GenePix 4000B (1)
Illumina HiSeq 1000 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion ETD (1)
Q Exactive HF (1)
GCMS-QP2010 Plus (Shimadzu) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - (1)
Exactive (Thermo Scientific) (1)
API 4000 QTRAP (AB Sciex) (1)

Publication Date

2012 (28)
2010 (26)
2013 (15)
2007 (14)
2016 (12)
2008 (12)
2021 (11)
2024 (10)
2014 (10)
2011 (10)
2026 (10)
2025 (9)
2015 (9)
2018 (7)
2020 (6)
2022 (6)
2019 (6)
2023 (4)
2017 (4)
2009 (3)
2005 (2)

UNIPROT ID/AC

14331_ORYSJ (2)
14332_ORYSJ (2)
14333_ORYSJ (2)
14334_ORYSJ (2)
14335_ORYSJ (2)
14336_ORYSJ (2)
2ABA_ORYSJ (2)
40G2_ORYSJ (2)
6PGD1_ORYSJ (2)
6PGD2_ORYSJ (2)
6PGL4_ORYSJ (2)
A0A024FLK4_ORYSJ (2)
A0A0N7KDM0_ORYSJ (2)
A0A0N7KG12_ORYSJ (2)
A0A0N7KGX7_ORYSJ (2)
A0A0N7KH16_ORYSJ (2)
A0A0N7KIK0_ORYSJ (2)
A0A0N7KJV4_ORYSJ (2)
A0A0N7KKI1_ORYSJ (2)
Q9Y6K9 (1)
O15111 (1)
O15519 (1)
Q0VHD7 (1)
P25445 (1)
Q13158 (1)
Q14790 (1)
P25963 (1)
P19838 (1)
O14920 (1)
P42574 (1)

ENSEMBL ID

ENSG00000170477 (7)
ENSG00000229353 (3)
ENSG00000147251 (1)

CHEBI ID

CHEBI:17568 (6)
CHEBI:18012 (5)
CHEBI:28716 (5)
CHEBI:28044 (4)
CHEBI:16704 (4)
CHEBI:18237 (4)
CHEBI:28842 (4)
CHEBI:7916 (4)
CHEBI:30915 (4)
CHEBI:16335 (4)
CHEBI:17368 (4)
CHEBI:10642 (3)
CHEBI:17822 (3)
CHEBI:22660 (3)
CHEBI:18186 (3)
CHEBI:16811 (3)
CHEBI:28300 (3)
CHEBI:35621 (3)
CHEBI:25017 (3)
CHEBI:18211 (3)
CHEBI:18257 (3)
CHEBI:16958 (3)
CHEBI:17821 (3)
CHEBI:15843 (3)
CHEBI:15741 (3)
CHEBI:17268 (3)
CHEBI:15428 (3)
CHEBI:17154 (3)
CHEBI:33282 (1)
CHEBI:29108 (1)

Metabolite Name

Uric acid (3)
Hippuric acid (3)
Lactic acid (2)
Uracil (2)
Stearic acid (2)
Citric acid (2)
Succinic acid (2)
Phenylalanine (2)
Linoleic acid (2)
Hydroxyoctadecanoic acid (1)
Beta-Hydroxytetradecanoic acid (1)
3-OH Dodecanoic acid (1)
Cis-9-hexadecenoic acid (1)
N-Hexatriacontane (1)
N-Dotriacontane (1)
A-D-Glucopyranoside (1)
N-Octacosane (1)
P-Tolyl-b-D-glucuronide (1)
Trans-9-octadecenoic acid (1)
N-Docosane (1)
N-Nonadecane (1)
3,4,5-Trihydroxypentanoic acid (1)
2-pyrrolidone-5-carboxylic acid (1)
N-Pentadecane (1)
N-Dodecane (1)
Acetimidic acid (1)
Pentasiloxane (1)
Decanoate (1)
3-aminoadipic acid (1)
2-aminobutanoate (1)

First Public Date

2017 (2)

Modelling Approach

Ordinary differential equation model (3)
Computational model (1)
Steady-state model (1)

Lab affiliation

Department of Molecular Biology, Princeton University, USA (3)
Department of Chemistry and Biochemistry. University of Colorado, Boulder. Boulder, CO 80303 (2)
Molecular Parasitology and Entomology Unit,Laboratory of Malaria and Vector Research, National Institutes of Health. USA. (2)
School of Life and Environmental Sciences, University of Sydney, NSW 2006 Australia (2)
School of Life and Environmental Sciences, University of Sydney, NSW Australia (2)
(Monash University). Y. T. Candace Ho: yee.ho@monash.edu (Monash University) (1)
Australian Regenerative Medicine Institute, Monash University, Wellington Road, Clayton, VIC 3800, Australia (1)
Baylor College of Medicine (1)
Baylor College of Medicine, Houston, Texas, 77030 (1)
Biochemistry (1)
Cell Biology Harvard Medical School (1)
Cell Biology, Harvard Medical School, Boston, MA (1)
ChemCentre, Forensic Science Laboratory, Building 500, Curtin University, Bentley, WA, Australia, 6102 (1)
Chief, Molecular Parasitology and Entomology Unit Laboratory of Malaria and Vector Research National Institutes of Health (1)
Daniela Loessner, daniela.loessner@monash.edu, Department of Chemical and Biological Engineering, Faculty of Engineering, Monash University, Clayton, Australia (1)
Department of Anatomy and Developmental BiologyMonash University, Clayton, Victoria, Australia; Development and Stem Cells Program, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia. Alexander N Combes alex.combes@monash.edu. David J Nikolic-Paterson david.nikolic-paterson@monash.edu. (1)
Department of Cell Biology, Harvard Medical School, Boston, MA (1)
Department of Cell Biology, Harvard Medical School, Boston, USA (1)
Department of Developmental Biology and Cancer Research,Hebrew University of Jerusalem, Israel (1)
Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia. Pok Man Leung, pok.leung@monash.edu, Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia Ralf B. Schittenhelm, ralf.schittenhelm@monash.edu, Monash Proteomics and Metabolomics Facility and Department of Biochemistry, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia (1)
Department of Molecular Biology, Princeton University, United States (1)
Division of Pediatric Oncology, Sidney Kimmel Comprehensive Cancer Center, The Johns Hopkins University School of Medicine, Baltimore, MD. (1)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (1)
Forensic Science Laboratory, Chemcentre, Western Australia (1)
Harvard Medical School (1)
Harvard medical school, Department of Cell Biology (1)
Hebrew University (1)
Molecular Parasitology and Entomology Unit; Laboratory of Malaria and Vector Research; National Institutes of Health (1)
Neurotoxin Research Group, School of Life Sciences, The University of Technology Sydney, Ultimo, NSW 2007, Australia; kenneth.rodgers@uts.edu.au (K.J.R.) (1)
Prof. Nir Eynon, Australian Regenerative Medicine Institute, Monash University, Clayton VIC 3800, Australia.Proteomics contact: Dr Joel R. Steele, Monash Proteomics & Metabolomics Platform, Monash Biomedicine Discovery Institute, Monash University, Clayton VIC, Australia (1)

IsPrivate

False (5)

Submitter Keywords

Ersilia (1)
Machine Learning Model (1)

Modification

4'-dihydroxyphenylalanine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (63)
ChIP-seq (12)
Comparative genomic hybridization by array (9)
RNA-seq of coding RNA (9)
Unknown experiment type (4)
ChIP-chip by tiling array (4)
Other (4)
Transcription profiling by tiling array (2)
RNA-seq of non coding RNA (2)
High-throughput sequencing (1)
ChIP-chip by array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2010 (29)
2021 (19)
2013 (18)
2012 (15)
2007 (15)
2020 (14)
2011 (13)
2023 (13)
2022 (13)
2025 (12)
2016 (12)
2015 (12)
2008 (12)
2019 (11)
2018 (11)
2014 (9)
2024 (9)
2017 (9)
2009 (3)
2026 (3)
2003 (2)
2005 (1)
2004 (1)

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Transcriptome of Mycoplasma genitalium under osmotic stress

Mycoplasma genitalium is the causative agent of non-gonococcal, chlamydia-negative urethritis in men and has been linked to reproductive tract disease syndromes in women. As with other mycoplasmas, M. genitalium lacks many regulatory genes because of its streamlined genome and total dependence on a ...

ORGANISM(S): Mycoplasma genitalium

2010-11-15 | E-GEOD-22661 | biostudies-arrayexpress

Mycoplasma pneumoniae processes functionally diverse proteins (N-Terminiome & Surfaceome)

Mycoplasma pneumoniae is a significant cause of pneumonia, particularly in children, the elderly and the immunocompromised, and post infection sequelae affecting organ sites distant to the respiratory tract are common. It is also a model pathogen where extensive ‘omics’ studies have been conducted t...

ORGANISM(S): Mycoplasma pneumoniae Mycoplasma pneumoniae (strain ATCC 29342 / M129)

2021-05-01 | PXD022356 | Pride

Gene Expression data from induced Pluripotent Stem cells from healthy control donors

We have generated human induced Pluripotent Stem cells (hiPSc) using Retroviral or Sendai virus-mediated delivery of reprogramming factors. hiPSc lines have been screened using SNP array to assess chromosomal stability (alongside the fibroblast lines from which they derived), and validation of the p...

ORGANISM(S): Homo sapiens

2017-05-22 | GSE99123 | GEO

SNP genotype data from induced Pluripotent Stem cells from healthy control donors

ORGANISM(S): Homo sapiens

2017-05-22 | GSE99124 | GEO

Phase I pharmacokinetic and pharmacodynamic study of pazopanib in children with soft tissue sarcoma and other refractory solid tumors: a children's oncology group phase I consortium report.

Not available

S-EPMC3739862 | biostudies-literature

Panorama of ancient metazoan macromolecular complexes: Nematostella vectensis

By combining extensive biochemical fractionation with quantitative mass spectrometry, we directly examined the composition of soluble multiprotein complexes among diverse animal models. The project has been jointly supervised by Andrew Emili and Edward M. Marcotte. Project website: http://metazoa.me...

ORGANISM(S): Nematostella vectensis

2015-06-18 | PXD002324 | Pride

Lc-msms Conservation Metazoan Biofractionation Across species

Phase I Study of the Aurora A Kinase Inhibitor Alisertib in Combination With Irinotecan and Temozolomide for Patients With Relapsed or Refractory Neuroblastoma: A NANT (New Approaches to Neuroblastoma Therapy) Trial.

Not available

S-EPMC4872349 | biostudies-literature

Accumulation of inorganic polyphosphate mediates metabolic downshift and antibiotic tolerance in Mycobacterium tuberculosis

The stringent response, involving the regulatory molecules inorganic polyphosphate (poly P) and (p)ppGpp, is believed to mediate Mycobacterium tuberculosis persistence. In this study, we identified a novel exopolyphosphatase responsible for poly P hydrolysis. Using two different poly P-accumulating ...

ORGANISM(S): Mycobacterium tuberculosis CDC1551

2015-02-20 | E-GEOD-57868 | biostudies-arrayexpress

Cribellate thread production as model for spider's spinneret kinematics.

Not available

S-EPMC8046689 | biostudies-literature

An obligate aerobe adapts to hypoxia by hybridising fermentation with carbon storage

In soil ecosystems, obligately aerobic bacteria survive oxygen deprivation (hypoxia) by entering non-replicative persistent states. Little is known about how these bacteria rewire their metabolism to stay viable during persistence. The model obligate aerobe Mycobacterium smegmatis maintains redox ho...

2026-04-22 | MTBLS11404 | MetaboLights

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386 Results

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