Johansson B B - OmicsDI

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Unknown (1239)
Transcriptomics (95)
Proteomics (52)
Genomics (23)
Metabolomics (15)
Other (1)

Organisms

Homo sapiens (70)
Andropogon gerardi (35)
Bacteria (35)
Canis lupus familiaris (35)
Cnidaria (35)
Cricetulus griseus (35)
Eukaryota (35)
Fasciola (35)
Hepatitis B virus (35)
Human betaherpesvirus 5 (35)
Madurella mycetomatis (35)
Mesocricetus auratus (35)
Mus musculus (19)
Paxillus involutus (9)
Drosophila melanogaster (8)
Listeria monocytogenes (2)
Paxillus involutus ATCC 200175 (2)
Leuconostoc gasicomitatum LMG 18811 (1)
Laccaria bicolor (1)
Capra hircus (1)
Rana temporaria (1)
Skeletonema marinoi (1)
Streptococcus pyogenes (1)
Halobacterium salinarum (1)
Populus tremula x Populus tremuloides (1)
Betula pendula (1)
Caenorhabditis elegans (1)
Saccharomyces cerevisiae (1)
Danio rerio (1)
Rattus rattus (1)

Organisms

Paxillus involutus (1)

Repository

biostudies-arrayexpress (95)
pride (35)
EGA (22)
MetaboLights (15)
jPOST (7)
PeptideAtlas (6)
PanoramaPublic (2)
geo (1)
GPMDB (1)
MassIVE (1)
ENA (1)

Tissue

Lung (5)
Colon (4)
Cell culture (3)
Colonic mucosa (3)
Epithelial cell (3)
B cell (2)
B-cell chronic lymphocytic leukemia cell (2)
Blood (2)
Bone marrow (2)
Bronchoalveolar lavage (2)
Liver (2)
Melanocyte (2)
Monocyte (2)
Myeloid cell (2)
Blood serum (1)
Bone marrow cell (1)
Embryonic stem cell (1)
Feces (1)
Glomerular mesangial cell (1)
Goblet cell (1)
Heart (1)
Ileum (1)
Kidney (1)
Kit and Sca1-positive hematopoietic stem cell (1)
Leaf (1)
Mucus (1)
Myeloblast (1)
Ovary (1)
Placenta (1)
Primary cell (1)

Disease

Acute leukemia (2)
COVID-19 (2)
Chronic lymphocytic leukemia (2)
Lung cancer (2)
Non-small cell lung carcinoma (2)
Apparently healthy (1)
Prostate carcinoma (1)
Not Available (1)
Acute myeloid leukemia (1)
Breast cancer (1)
Chronic bronchitis (1)
Glioblastoma (1)
Lung disease (1)
Melanoma (1)
Obesity (1)
Sarcoidosis (1)
Severe acute respiratory syndrome (1)
Skin melanoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (35)
Shotgun proteomics (22)
Mass spectrometry (14)
Bottom-up proteomics (7)
Data-dependent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (2)
SWATH MS (2)
Top-down proteomics (2)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Mass spectrometry assay (1)
Data-independent acquisition (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Gas Chromatography MS - (4)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (4)
Illumina HiSeq 2000 (3)
Axon GenePix 4000A scanning hardware (2)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Gas Chromatography MS - positive (2)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
GeneChip Scanner 3000 [Affymetrix] (1)
ScanArray Express HT [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
Affymetrix Fluidics Station 400 (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
AB 5500xl Genetic Analyzer (1)
Instrument (1)
Q Exactive (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (negative mode) (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (positive mode) (1)
LECO Pegasus III, GCTOFMS (1)
Leco Pegasus III (1)
Pegasus 4D GCxGC-TOFMS (1)
Liquid Chromatography MS - POS - reverse phase MS - NEG - reverse phase (1)
Gas Chromatography MS (1)
Liquid Chromatography MS - (1)

Publication Date

2012 (15)
2015 (13)
2008 (12)
2021 (11)
2014 (11)
2013 (11)
2022 (10)
2020 (10)
2010 (8)
2007 (8)
2025 (8)
2018 (7)
2011 (7)
2016 (6)
2026 (5)
2017 (4)
2019 (3)
2005 (3)
2024 (3)
2023 (3)
2009 (1)
2006 (1)
2004 (1)

CHEBI ID

CHEBI:15428 (10)
CHEBI:17992 (9)
CHEBI:28842 (9)
CHEBI:17268 (9)
CHEBI:6650 (9)
CHEBI:16196 (9)
CHEBI:16199 (9)
CHEBI:17351 (9)
CHEBI:30769 (9)
CHEBI:30805 (8)
CHEBI:30915 (8)
CHEBI:16737 (8)
CHEBI:15756 (8)
CHEBI:17234 (7)
CHEBI:18257 (7)
CHEBI:17113 (7)
CHEBI:16958 (7)
CHEBI:17859 (7)
CHEBI:17964 (7)
CHEBI:18012 (7)
CHEBI:32365 (6)
CHEBI:16113 (6)
CHEBI:27693 (6)
CHEBI:17822 (6)
CHEBI:26271 (6)
CHEBI:25094 (6)
CHEBI:26986 (6)
CHEBI:16811 (6)
CHEBI:24898 (6)
CHEBI:25017 (6)

Metabolite Name

Citric acid (5)
Lactic acid (4)
Sucrose (4)
Malic acid (4)
Stearic acid (4)
3-hydroxybutyric acid (3)
Leucine (3)
Threonic acid (3)
Chenodeoxycholic acid (3)
Glycine (3)
Creatinine (3)
Glycine (3)
Glycerol (3)
Succinic acid (3)
Ornithine (3)
Succinic acid (3)
Cholic acid (3)
Glycocholic acid (3)
Malic acid (3)
Serine (3)
Alanine (3)
Palmitic acid (3)
Oleic acid (3)
Linoleic acid (3)
Isoleucine (3)
Glutaric acid (3)
Dodecanoic acid (3)
Urea (3)
1,5-anhydro-D-glucitol (2)
Glucopyranoside (2)

First Public Date

2014 (1)

Study type

Transcription profiling by array (60)
RNA-seq of coding RNA (11)
Comparative genomic hybridization by array (8)
Transcription profiling by tiling array (4)
ChIP-chip by tiling array (3)
Genotyping by array (2)
Unknown experiment type (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Antigen profiling (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2022 (128)
2021 (121)
2023 (113)
2020 (112)
2025 (100)
2019 (86)
2024 (86)
2018 (79)
2015 (79)
2016 (66)
2017 (63)
2014 (54)
2013 (44)
2012 (41)
2011 (34)
2010 (31)
2026 (21)
2008 (19)
2009 (14)
2007 (12)
2005 (11)
2004 (7)
2003 (3)
2002 (3)
2001 (2)
1999 (2)
2006 (1)
2000 (1)
1998 (1)

Lab affiliation

Lund Stem Cell Center, Division of Molecular Hematology, Lund University, Lund, Sweden (2)
University of Aberdeen (2)
Department of Clinical Sciences Lund, Section of Oncology, Lund University, Lund 221 85, Sweden (1)
Department of Oncology and Pathology, Karolinska Institutet, Scilifelab, Stockholm, Sweden (1)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory (1)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory (lab head) (1)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Stockholm, Sweden (1)
Department of Oncology-Pathology, Karolinska Institutet, and Science For Life Laboratory, Stockholm, Sweden (1)
Department of Rheumatology and Inflammation research, Sahlgrenska academy, Gothenburg University, Gothenburg, Sweden (1)
Dept. Oncology Pathology, Karolinska Institutet, Scilifelab, Stockholm, Sweden (1)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden (1)
Dept. Oncology-Pathology, Scilifelab, Karolinska Institutet, Stockholm, Sweden (1)
Faculty of Science, Mahidol University, Rama VI Rd., Ratchathewi, Bangkok 10400, Thailand (1)
Institutt for BIoingeniørfag (IBF), and CEMIR NTNU, Kunnskapssenteret, Øya, 7030, Norway (1)
Karolinska Institutet, Oncology and pathology department, Stockholm, Sweden (1)
Liisa Arike, PhD Researcher Mucin Biology Group Department of Medical Biochemistry and Cell Biology University of Gothenburg Sweden (1)
Microchemistry and Proteomics Core Facility, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA (1)
Mucin Biology Group, Proteomics Laboratory, Department of Medical Biochemistry and Cell Biology, University of Gothenburg (1)
Mucin Biology Proteomics Lab, Department of Medical Biochemistry and Cell biology, University of Gothenburg (1)
National Omics Center, NSTDA, Thailand (1)
Oncology/pathology (1)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchatel, Switzerland (1)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 NeuchÃ¢tel, Switzerland (1)
Professor, MD, PhD (1)
Professor, Oncology and pathology department, Karolinska Institute (1)
Proteomics Core Facility, Sahlgrenska Academy, University of Gothenburg, Sweden (1)
Proteomics laboratory, Mucin Biology Groups, Department of Medical Biochemistry and Cell Biology, University of Gothenburg, Sweden (1)
School of Life and Environmental Sciences, Charles Perkins Centre, University of Sydney, Australia (1)
Science for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden (1)
Science for Life Laboratory; Department of Oncology Pathology, Karolinska Institute, Stockholm, Sweden (1)

Tags

xref:PubMed:22469289 (1)

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TEXS: in-vacuum tender X-ray emission spectrometer with 11 Johansson crystal analyzers.

Not available

S-EPMC7285681 | biostudies-literature

Arabidopsis B-box transcription factors BBX20-22 promote UVR8 photoreceptor-mediated UV-B responses.

Not available

S-EPMC9541035 | biostudies-literature

Sinding-Larsen-Johansson disease. Clinical features, imaging findings, conservative treatments and research perspectives: a scoping review.

Not available

S-EPMC11438430 | biostudies-literature

Transcriptional analyses of the ectomycorrhizal (ECM) fungus Paxillus involutus during growth on various lignocellulose soil substrates

In this study, examinations were performed on how the ECM fungus Paxillus involutus degrade complex, plant and litter material by using elemental analyses, FTIR spectroscopy, pyrolysis-GC/MS, and synchronous fluorescence spectroscopy together with microarray analyses screening 12,214 gene models, de...

ORGANISM(S): Paxillus involutus

2012-02-01 | E-GEOD-34402 | biostudies-arrayexpress

Increases in Neuroticism May Be an Early Indicator of Dementia: A Coordinated Analysis.

Not available

S-EPMC7179800 | biostudies-literature

One-carbon metabolite ratios as functional B-vitamin markers and in relation to colorectal cancer risk.

Not available

S-EPMC6587534 | biostudies-literature

Proteogenomic subtyping of chronic lymphocytic leukemia identifies subgroups with contrasting clinical outcome and distinct ex-vivo drug response profile

We have performed a comprehensive proteomic analysis of clinical patient samples of chronic lymphocytic leukemia (CLL) alongside genome-, transcriptome- and ex-vivo drug response profiling. Trisomy 12 and IGHV mutation status had the strongest impact on the proteome and transcriptome; and SF3B1 muta...

ORGANISM(S): Homo sapiens (Human)

2024-06-21 | PXD017453 | Pride

Proteogenomic subtyping of chronic lymphocytic leukemia identifies subgroups with contrasting clinical outcome and distinct ex-vivo drug response profile

ORGANISM(S): Homo sapiens (Human)

2022-10-17 | PXD028936 | Pride

Lymphoblast B-cell Chronic lymphoblastic leukemia Proteogenomics Human Lc-ms Leukemia Cancer Clinical samples. Hirief Proteomics

B cells regulate macrophage phenotype and response to chemotherapy in squamous carcinomas.

Not available

S-EPMC4063283 | biostudies-literature

Type I Interferons Promote Germinal Centers Through B Cell Intrinsic Signaling and Dendritic Cell Dependent Th1 and Tfh Cell Lineages.

Not available

S-EPMC9326081 | biostudies-literature

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1425 Results

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