Kim Shin S - OmicsDI

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Unknown (3949)
Proteomics (56)
Genomics (39)
Transcriptomics (31)
Metabolomics (5)
Genomic (1)
Other (1)

Organisms

Homo sapiens (62)
Caenorhabditis elegans (23)
Mus musculus (21)
Rattus norvegicus (2)
rat gut metagenome (1)
Burkholderia glumae BGR1 (1)
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Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
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Xenopus laevis (1)

Repository

biostudies-arrayexpress (56)
pride (47)
EGA (15)
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Tissue

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Disease

Alzheimer's disease (2)
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Not Available (1)
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Technology Type

Mass Spectrometry (47)
Shotgun proteomics (29)
Data-dependent acquisition (9)
Bottom-up proteomics (8)
Affinity purification coupled with mass spectrometry proteomics (6)
Mass spectrometry (5)
Gel-based experiment (4)
Illumina OmniQuad 2.5 - CNVpartition (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2000 (3)
LTQ Orbitrap (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
NextSeq 500 (1)
Instrument (1)
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Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
MS Imaging - (1)
Unknown (1)

Publication Date

2011 (25)
2014 (12)
2023 (10)
2020 (9)
2026 (9)
2025 (8)
2015 (7)
2021 (5)
2024 (5)
2016 (4)
2018 (4)
2013 (3)
2010 (3)
2019 (3)
2012 (2)
2017 (2)
2022 (2)
2007 (1)
2006 (1)

CHEBI ID

CHEBI:17992 (3)
CHEBI:30769 (3)
CHEBI:32816 (3)
CHEBI:6650 (3)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:16709 (2)
CHEBI:16865 (2)
CHEBI:17057 (2)
CHEBI:17268 (2)
CHEBI:17306 (2)
CHEBI:17368 (2)
CHEBI:17568 (2)
CHEBI:17596 (2)
CHEBI:17724 (2)
CHEBI:17822 (2)
CHEBI:18183 (2)
CHEBI:22653 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:26271 (2)
CHEBI:26986 (2)
CHEBI:27266 (2)
CHEBI:28044 (2)
CHEBI:28053 (2)
CHEBI:28757 (2)
CHEBI:30817 (2)
CHEBI:33508 (2)
CHEBI:10072 (1)
CHEBI:1148 (1)

Metabolite Name

Sucrose (3)
Asparagine (2)
Citric acid (2)
Fructose (2)
Hypoxanthine (2)
Inosine (2)
Isoleucine (2)
Leucine (2)
Malic acid (2)
Melibiose (2)
Palmitic acid (2)
Phenylalanine (2)
Proline (2)
Pyruvic acid (2)
Serine (2)
Succinic acid (2)
Threonine (2)
Uracil (2)
Valine (2)
(4R)-4-Hydroxy-L-glutamic acid (1)
(R)-3-Hydroxybutyric acid (1)
(S)-3-Hydroxybutyric acid (1)
1,3-Diaminopropane (1)
1-Methyl-L-histidine (1)
1-Methylhistamine (1)
1-Methylnicotinamide (1)
2,3-Dihydroxypropanoic acid (1)
2,3-Dihydroxypropyl hexopyranoside (1)
2,3-Diphospho-D-glyceric acid (1)
2,3-Pyridinedicarboxylic acid (1)

Study type

ChIP-seq (24)
Transcription profiling by array (13)
RNA-seq of coding RNA (7)
RNA-seq of non coding RNA (5)
Comparative genomic hybridization by array (3)
Transcription profiling by MPSS (1)
Genotyping by array (1)
Other (1)
Proteomic profiling by array (1)

Release Date

2025 (541)
2023 (489)
2022 (472)
2024 (466)
2021 (414)
2020 (349)
2019 (262)
2018 (211)
2017 (164)
2016 (162)
2015 (119)
2014 (94)
2026 (68)
2011 (55)
2012 (52)
2013 (33)
2010 (22)
2009 (11)
2008 (7)
2005 (5)
2007 (4)
2004 (2)
2006 (1)
2002 (1)
2001 (1)

Lab affiliation

Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (4)
Asan Medical Center, Clinical Proteomics Core, Republic of Korea (1)
Assistant professor, School of Biological Sciences, Seoul National University. (1)
Basic Research Lab for “Epigenetic Regeneration of Aged Skeleto-Muscular System (ERASMUS)”, Department of Molecular Genetics and Dental Pharmacology, School of Dentistry, Dental Research Institute, Seoul National University, Seoul, South Korea (1)
Center For Theragnosis Korea Institute of Science and Technology 5, Hwarang-ro 14-gil, Seongbuk-gu, Seoul (1)
Center for Natural Product Systems Biology, Korea Institute of Science and Technology (1)
Center for Plant Aging Research, Institute for Basic Science, and Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology, Daegu 42988, Republic of Korea (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, Korea School of Biological Sciences, Seoul National University, Seoul 08826, Korea (1)
Center for RNA Research, Institute for Basic Science, Seoul National University (1)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (1)
DIRECTOR, THE PICOWER INSTITUTE FOR LEARNING AND MEMORYAT MIT PICOWER PROFESSOR OF NEUROSCIENCE, DEPARTMENT OF BRAIN AND COGNITIVE SCIENCES SENIOR ASSOCIATE MEMBER, BROAD INSTITUTE (1)
Daegu Catholic University School of Medicine (1)
Dana Farber Cancer Institute (1)
Dana Farber Cancer Institute, Boston, MA Harvard Medical School, Boston, MA (1)
Department of Biochemistry, College of Life Science and Technology, Institute for Bio-medical Convergence Science and Technology, Yonsei University, Seoul, Republic of Korea (1)
Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, South Korea (1)
Department of Life Sciences and Division of Integrative Biosciences and Biotechnology Pohang University of Science and Technology Pohang 790-784, Republic of Korea (1)
Department of Life Sciences, POSTECH, Pohang, Republic of Korea (1)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (South Korea) (1)
Department of Physiology and Department of Biomedical Sciences, Ajou University School of Medicine, Suwon, Republic of Korea Immune-network pioneer research center, Ajou University School of Medicine, Suwon, Republic of Korea (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute,Pusan National University, Miryang 50463, Republic of Korea (1)
Department of Surgery, Samsung Medical Center (1)
Institute of Pharmaceutical Sciences, Swiss Federal Institute of Technology (ETH) Zurich, 8093 Zurich, Switzerland (1)
Joseph C. Wu, MD, PhD Director, Stanford Cardiovascular Institute Simon H. Stertzer, MD, Professor of Cardiovascular Medicine & Radiology Stanford University School of Medicine Lorry I. Lokey Stem Cell Research Building 265 Campus Drive, Rm G1120B Stanford, CA 94305-5454 Phone: (650) 736-2246 (1)
Korea Basic Science Institute (1)
Korea Institute of Science and Technology (1)
Kyung Hee University (1)
Prometabio Research Institute, prometabio co., ltd. (1)
Proteomics and Metabolomics Core Facility, Biomedical Research Institute, Seoul National University Hospital (1)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (1)

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Dataset on the changes of neutrophils treated with retinoic acid.

Not available

S-EPMC5382026 | biostudies-literature

Report on the complete organelle genomes of Orobanche Filicicola Nakai ex Hyun, Y. S. Lim & H. C. Shin (Orobanchaceae): insights from comparison with Orobanchaceae plant genomes.

Not available

S-EPMC11834515 | biostudies-literature

Coenzyme Q₁₀ alleviates tacrolimus-induced mitochondrial dysfunction in kidney.

Not available

S-EPMC6902707 | biostudies-literature

Does the Type of Extracorporeal Shock Therapy Influence Treatment Effectiveness in Lateral Epicondylitis? A Systematic Review and Meta-analysis.

Not available

S-EPMC7491893 | biostudies-literature

Sequential modulation of RNase III and RNase G expression in response to host environment conditions promotes pathogenicity through the control of hns expression in Salmonella Typhimurium

Our results demonstrate that RNase G controls expression levels of H-NS encoded by hns, strongly associated with the pathogenicity of S. Typhimurium. The hns mRNA abundance is mediated by RNase G, which cleaves the 5’-UTR of hns mRNA. In the upstream pathway, the induced expression of RNase G in hos...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

2021-01-08 | PXD011090 | Pride

Simultaneous detection of Streptococcus pneumoniae, S. mitis, and S. oralis by a novel multiplex PCR assay targeting the gyrB gene.

Not available

S-EPMC3592088 | biostudies-literature

Fat-specific protein 27 inhibits lipolysis by facilitating the inhibitory effect of transcription factor Egr1 on transcription of adipose triglyceride lipase.

Not available

S-EPMC4031504 | biostudies-literature

Identification of CDK1 phosphorylation of TFCP2L1 from murine embryonic stem cells and bladder cancer cells

Molecular programs involved in embryogenesis are frequently upregulated in oncogenic dedifferentiation and metastasis. However, their precise roles and regulatory mechanisms remain elusive. Here, we showed that CDK1 phosphorylation of TFCP2L1, a pluripotency-associated transcription factor, orches...

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2019-11-08 | PXD015635 | Pride

Pluripotency Cdk1 Stemness features Embryonic stem-cell Bladder cancer

Phylogenetic analyses of HBV pre-s/s genes in mother-child pairs with long-term infection by presumed vertical transmission.

Not available

S-EPMC3991801 | biostudies-literature

S-amlodipine plus chlorthalidone vs. S-amlodipine plus telmisartan in hypertensive patients unresponsive to amlodipine monotherapy: study protocol for a randomized controlled trial.

Not available

S-EPMC6011241 | biostudies-literature

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