Kim Sun S - OmicsDI

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Unknown (1334)
Transcriptomics (57)
Proteomics (33)
Metabolomics (8)
Genomics (6)
Models (1)

Organisms

Homo sapiens (25)
Andropogon gerardi (25)
Bacteria (25)
Canis lupus familiaris (25)
Cnidaria (25)
Cricetulus griseus (25)
Eukaryota (25)
Fasciola (25)
Hepatitis B virus (25)
Human betaherpesvirus 5 (25)
Madurella mycetomatis (25)
Mesocricetus auratus (25)
Miscanthus x giganteus (25)
Mus musculus (25)
Mus musculus (15)
Zea mays (3)
Nicotiana attenuata (1)
Aspergillus nidulans (1)
Sorghum bicolor (1)
Oryza sativa Indica Group (1)
Streptomyces coelicolor A3(2) (1)
Streptomyces coelicolor (1)
Oryza sativa (1)
Populus trichocarpa (1)
Bos taurus (1)
Heterocephalus glaber (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Rattus norvegicus (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (60)
pride (25)
MetaboLights (7)
MassIVE (6)
EGA (3)
PAXDB (2)
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GNPS (1)

Tissue

Leaf (4)
HeLa cell (3)
Brain (2)
Seed (2)
Shoot (2)
Adipose tissue (1)
Blood plasma (1)
Cell culture (1)
Colon (1)
Fruit (1)
Glioblastoma multiforme cell (1)
Heart (1)
Kidney (1)
Lymph node (1)
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Neuronal stem cell (1)
Pancreas (1)
Permanent cell line cell (1)
Root (1)
Seedling (1)
Spleen (1)
Subcutaneous abdominal adipose tissue (1)
T cell (1)
Tuber (1)
Venom (1)

Disease

Parkinson's disease (2)
Brain glioblastoma multiforme (1)
Cardiovascular system disease (1)
Colon cancer (1)
Coronavirus infectious disease (1)
Disease free (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (25)
Shotgun proteomics (11)
Mass spectrometry (7)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Gel-based experiment (3)
Data-dependent acquisition (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

LTQ Orbitrap (2)
Illumina NovaSeq X (1)
NextSeq 500 (1)
Xevo G2 Q-Tof (1)
LTQ FT (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Agilent 7890A GC-LECO Pegasus HT TOFMS (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2011 (10)
2010 (10)
2014 (9)
2022 (9)
2015 (7)
2023 (7)
2025 (6)
2016 (6)
2009 (6)
2013 (5)
2020 (5)
2012 (4)
2024 (3)
2021 (3)
2005 (2)
2019 (2)
2017 (2)
2018 (2)
2026 (2)
2008 (1)
2004 (1)

UNIPROT ID/AC

1433A_SOYBN (2)
1433B_SOYBN (2)
1433C_SOYBN (2)
1433D_SOYBN (2)
2SS_SOYBN (2)
3847.GLYMA0042S100.1 (2)
3847.GLYMA0070S50.1 (2)
3847.GLYMA01G05321.1 (2)
3847.GLYMA01G05765.1 (2)
3847.GLYMA01G09540.1 (2)
3847.GLYMA01G09640.1 (2)
3847.GLYMA01G14160.1 (2)
3847.GLYMA01G22140.1 (2)
3847.GLYMA01G23427.1 (2)
3847.GLYMA01G25116.1 (2)
3847.GLYMA01G27160.1 (2)
3847.GLYMA01G29440.1 (2)
3847.GLYMA01G33803.1 (2)
3847.GLYMA01G35730.1 (2)
3847.GLYMA01G35820.1 (2)
3847.GLYMA01G42950.2 (2)
3847.GLYMA02G01060.2 (2)
3847.GLYMA02G01170.1 (2)
3847.GLYMA02G04090.1 (2)
3847.GLYMA02G06710.1 (2)
3847.GLYMA02G07430.1 (2)
3847.GLYMA02G07740.1 (2)
3847.GLYMA02G11920.1 (2)
3847.GLYMA02G14495.1 (2)
3847.GLYMA02G14521.1 (2)

CHEBI ID

CHEBI:30769 (4)
CHEBI:33508 (3)
CHEBI:15741 (3)
CHEBI:17497 (3)
CHEBI:37024 (3)
CHEBI:16865 (3)
CHEBI:15940 (3)
CHEBI:7916 (3)
CHEBI:16467 (3)
CHEBI:32816 (3)
CHEBI:27870 (2)
CHEBI:28918 (2)
CHEBI:30813 (2)
CHEBI:28997 (2)
CHEBI:30754 (2)
CHEBI:30831 (2)
CHEBI:17626 (2)
CHEBI:17992 (2)
CHEBI:30805 (2)
CHEBI:30816 (2)
CHEBI:16450 (2)
CHEBI:16231 (2)
CHEBI:68567 (2)
CHEBI:17822 (2)
CHEBI:15414 (2)
CHEBI:16709 (2)
CHEBI:26271 (2)
CHEBI:49033 (2)
CHEBI:18237 (2)
CHEBI:18261 (2)

Metabolite Name

Glycolic acid (3)
Nicotinic acid (3)
L-Arginine (3)
Succinic acid (3)
Pantothenic acid (3)
Citric acid (3)
L-Lactic acid (2)
Pyruvic acid (2)
Leucine (2)
2-Ketobutyric acid (2)
2-Methylglutaric acid (2)
4-Hydroxyphenylpyruvic acid (2)
Uracil (2)
Prostaglandin E2 (2)
Mannitol (2)
Maleic acid (2)
Dehydroascorbic acid (2)
L-Histidine (2)
Xanthosine (2)
Citraconic acid (2)
3-Hydroxybutyric acid (2)
Glyceric acid (2)
Malic acid (2)
Adenosine (2)
Aminoadipic acid (2)
Alanine (2)
Riboflavin (2)
Proline (2)
Oleic acid (2)
L-Tryptophan (2)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (32)
RNA-seq of coding RNA (14)
ChIP-seq (3)
Transcription profiling by SAGE (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Transcription profiling by tiling array (1)

Release Date

2023 (150)
2024 (137)
2025 (134)
2021 (128)
2022 (121)
2020 (112)
2018 (94)
2019 (81)
2016 (68)
2015 (66)
2017 (59)
2014 (56)
2013 (35)
2011 (33)
2012 (26)
2009 (24)
2026 (23)
2010 (19)
2008 (12)
2007 (5)
2005 (3)
2004 (3)
2006 (2)
2003 (1)
2001 (1)

Lab affiliation

Pathology - Lab & Genomic Medicine (LGM); Washington University School of Medicine (3)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (2)
Biological Engineering, MIT (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, S. Korea School of Biological Sciences, Seoul National University, Seoul 08826, S. Korea (1)
Clinical Diagnostic Laboratory Department of Clinical Veterinary Medicine Vetsuisse Faculty University of Bern Bern Switzerland (1)
Dana Farber Cancer Institute (1)
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School; Boston, MA, United States (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)
Department of Chemistry and Biochemistry University of Bern Freiestrasse 3 3012 Bern Switzerland (1)
Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, South Korea (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute,Pusan National University, Miryang 50463, Republic of Korea (1)
Department of Plant Bioscience, Life and industry Convergence Research Institute, Pusan National University, Miryang 50463, South Korea (1)
Department of Plant Bioscience, Pusan National University, Miryang, 50463, Republic of Korea (1)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Institute of Cell Biology University of Bern (1)
Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, CH-3012 Bern, Switzerland (1)
Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB) (1)
Research Group of Developmental Disorders and Rare Diseases, Korea Brain Research Institute (KBRI), Daegu 41062, Republic of Korea (1)
School of Pharmaceutical Sciences, Key Laboratory of Biotechnology Pharmaceutical Engineering, Wenzhou Medical University, Wenzhou, Zhejiang, P. R. China (1)
University of Bayreuth, Universitätsstrasse 30, 95447 Bayreuth, Germany (1)
University of Michigan (1)

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Epigenetic resetting in the Parkinson's disease entail histone modification remodeling.

Parkinson's disease (PD) is a progressive neurodegenerative disorder characterized by the loss of dopaminergic neurons (DN) in the substantia nigra and disrupted cellular maintenance. Here, we demonstrate that NDST3-mediated epigenetic reprogramming halts neuronal degeneration and restores motor...

ORGANISM(S): Homo sapiens (Human)

2026-03-16 | PXD067971 | Pride

Label-free Quantitative Proteomics Approach to Unravel the Jerusalem artichoke (Helianthus tuberosus L.) Tuber

The present research investigates a ‘medicinal’ plant Jerusalem artichoke (abbreviated as JA) (Helianthus tuberosus L.) tuber proteome with an aim to unravel its proteome using a high-throughput proteomics technique. Although JA has been historically know to the Native Americans, it was brought back...

ORGANISM(S): Helianthus tuberosus

2022-02-21 | PXD030744 | Pride

Type 2 diabetes mellitus Solid-phase extraction Jerusalem artichoke Lc-ms/ms

The standardisation of uveitis nomenclature (SUN) project.

Not available

S-EPMC10040472 | biostudies-literature

Imatinib for melanomas harboring mutationally activated or amplified KIT arising on mucosal, acral, and chronically sun-damaged skin.

Not available

S-EPMC4878082 | biostudies-literature

Making of Mobile SunSmart: Co-designing a Just-in-Time Sun Protection Intervention for Children and Parents.

Not available

S-EPMC8041475 | biostudies-literature

Integrative and comparative genomic analysis of lung squamous cell carcinomas in East Asian patients.

Not available

S-EPMC4062710 | biostudies-literature

Vasorelaxant Effect of Trachelospermi caulis Extract on Rat Mesenteric Resistance Arteries.

Not available

S-EPMC9413539 | biostudies-literature

Vasodilatory Effect of Alpinia officinarum Extract in Rat Mesenteric Arteries.

Not available

S-EPMC9104054 | biostudies-literature

An Integrated Biochemical, Proteomics, and Metabolomics Approach for Supporting Medicinal Value of Panax ginseng Fruits (GC-MS assay)

Panax ginseng roots are well known for their medicinal properties and have been used in Korean and Chinese traditional medicines for 1000s of years. However, the medicinal value of P. ginseng fruits remain poorly characterized. Using gas chromatography-time of flight mass spectrometry (GC-TOF MS), 6...

2016-11-18 | MTBLS350 | MetaboLights

YAP inactivation in estrogen receptor alpha-positive hepatocellular carcinoma with less aggressive behavior.

Not available

S-EPMC8257598 | biostudies-literature

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