Lab Max M - OmicsDI

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Unknown (569)
Proteomics (265)
Transcriptomics (75)
Genomics (50)
Metabolomics (11)

Organisms

Homo sapiens (147)
Mus musculus (74)
Caenorhabditis elegans (33)
Drosophila melanogaster (20)
Saccharomyces cerevisiae (17)
Escherichia coli (11)
Rattus norvegicus (9)
Arabidopsis thaliana (5)
Glycine max (5)
Hordeum vulgare (5)
Bos taurus (3)
Mycoplasmoides gallisepticum S6 (3)
Vigna unguiculata (2)
Gasterosteus aculeatus (2)
Candida albicans (2)
Aspergillus fumigatus (2)
Saccharomyces cerevisiae BY4741 (1)
Amphimedon queenslandica (1)
Caulobacter vibrioides (1)
Mytilus galloprovincialis (1)
Populus x canadensis (1)
Streptococcus suis 05ZYH33 (1)
Coregonus clupeaformis (1)
Bacillus anthracis str. Sterne (1)
Strongylocentrotus purpuratus (1)
Bathymodiolus azoricus (1)
Leishmania major (1)
Apis mellifera (1)
Populus tremula x Populus alba (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Organisms

Sorex araneus (3)
Mus musculus (3)
Mus musculus musculus x Mus musculus domesticus (1)

Repository

pride (259)
biostudies-arrayexpress (116)
MetaboLights (11)
ENA (9)
MassIVE (4)
iProX (1)
jPOST (1)

Tissue

Cell culture (55)
Brain (17)
Epithelial cell (9)
Blood plasma (7)
Embryonic stem cell (7)
Liver (7)
Blood cell (6)
Kidney (6)
Stem cell (6)
T cell (6)
Blood (5)
Permanent cell line cell (5)
Blood serum (4)
Cell suspension culture (4)
Fibroblast (4)
Heart (4)
Hepatocyte (4)
Leaf (4)
Plant cell (4)
Root (4)
Whole body (4)
Dental plaque (3)
Embryo (3)
HeLa cell (3)
Macrophage (3)
Malignant cell (3)
Oocyte (3)
Primary cell (3)
B cell (2)
JURKAT cell (2)

Disease

Disease free (7)
Alzheimer's disease (5)
Breast cancer (4)
Brain glioblastoma multiforme (3)
Cardiovascular system disease (3)
Amyotrophic lateral sclerosis (2)
Autism spectrum disorder (2)
Colon cancer (2)
Cystic fibrosis (2)
Human immunodeficiency virus infectious disease (2)
Influenza (2)
Lymphoma (2)
Melanoma (2)
Rheumatoid arthritis (2)
Acute leukemia (1)
Acute myeloid leukemia (1)
Allergic asthma (1)
Anemia (1)
Angelman syndrome (1)
Anthrax disease (1)
Ascariasis (1)
Atopic dermatitis (1)
Barrett's esophagus (1)
Brain cancer (1)
COVID-19 (1)
Campylobacteriosis (1)
Cervix carcinoma (1)
Down syndrome (1)
Frontotemporal dementia (1)
Noonan syndrome (1)

Technology Type

Mass Spectrometry (259)
Shotgun proteomics (138)
Bottom-up proteomics (53)
Data-dependent acquisition (33)
Affinity purification coupled with mass spectrometry proteomics (25)
Gel-based experiment (18)
Data-independent acquisition (17)
SWATH MS (11)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
Mass spectrometry (8)
SRM/MRM (7)
Top-down proteomics (7)
Mass spectrometry assay (3)
DiaPASEF (3)
Affinity proteomics (2)
Immunopeptidomics (1)
MSE (1)
Mass spectrometry imaging (1)
Metaproteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (5)
MS Imaging - (3)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
NextSeq 500 (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Enriched phosphopeptides were loaded onto a 50 cm EN C18 PepMap column with elution over a 1 h acquisition driven by a Waters mClass nanoUPLC. Eluted peptides were measured using a Thermo Orbitrap Fusion Tribrid mass spectrometer, with MS spectra acquired in the Orbitrap and MS2 spectra acquired in parallel, following HCD fragmentation, in the linear ion trap. (1)
Orbitrap Astral (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - hilic (1)
MS Imaging - positive (1)

Publication Date

2021 (39)
2026 (38)
2025 (38)
2022 (37)
2013 (37)
2024 (36)
2020 (24)
2023 (23)
2015 (18)
2011 (17)
2016 (13)
2019 (13)
2017 (12)
2018 (12)
2010 (10)
2009 (7)
2012 (6)
2008 (6)
2014 (2)
2005 (2)
2006 (1)
2004 (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:25017 (3)
CHEBI:28044 (3)
CHEBI:32816 (3)
CHEBI:1148 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:16750 (2)
CHEBI:16865 (2)
CHEBI:16958 (2)
CHEBI:17057 (2)
CHEBI:17126 (2)
CHEBI:17234 (2)
CHEBI:17268 (2)
CHEBI:17562 (2)
CHEBI:17568 (2)
CHEBI:17821 (2)
CHEBI:17992 (2)
CHEBI:18012 (2)
CHEBI:18186 (2)
CHEBI:24898 (2)
CHEBI:27470 (2)
CHEBI:27570 (2)
CHEBI:27897 (2)
CHEBI:28189 (2)
CHEBI:29019 (2)
CHEBI:30769 (2)
CHEBI:10072 (1)
CHEBI:134221 (1)
CHEBI:134223 (1)

Metabolite Name

Leucine (3)
Carnitine (2)
Cytidine (2)
Glucose (2)
Glycine (2)
Isoleucine (2)
Phenylalanine (2)
Thymine (2)
((1S)-hexahydro-1H-pyrrolizin-1-yl)methyl 1-hydroxy-3-(2-((3,4,5-trihydroxy-6-methyltetrahydro-2H-pyran-2-yl)oxy)propan-2-yl)-1,3-dihydroisobenzofuran-5-carboxylate (1)
((1S)-hexahydro-1H-pyrrolizin-1-yl)methyl 3-(3-methylbut-2-en-1-yl)-4-((3,4,5,6-tetrahydroxytetrahydro-2H-pyran-2-yl)methoxy)-5-((3,4,5-trihydroxy-6-methyltetrahydro-2H-pyran-2-yl)oxy)benzoate (1)
((2R)-2-(((5S)-5-(dimethylamino)pyrrolidin-3-yl)amino)pyrrolidin-1-yl)((2R,3R,4S,10S)-2-(4-hydroxyphenyl)-6,8-dimethoxy-10-phenoxy-4-phenyl-2,3,4,5-tetrahydro-2,5-methanobenzo[b]oxepin-3-yl)methanone (1)
(+)-2-Amino-7-phosphonoheptanoic acid (1)
(+)-Secoisolariciresinol diglucoside (1)
(-)-Berbine (1)
(11-Ethyl-8,9-dihydroxy-4,6,16,18-tetramethoxy-11-azahexacyclo[7.7.2.12,5.01,10.03,8.013,17]nonadecan-13-yl)methyl 2-(2-methyl-4-oxoquinazolin-3-yl)benzoate (1)
(1R,13S,16S,18S)-15-methyl-5,7,12-trioxa-15-azapentacyclo[11.7.0.01,16.02,10.04,8]icosa-2,4(8),9,19-tetraene-13,18-diol (1)
(1R,4R,4'R,5S,5'S,6R,6'S,7R,9R,11R,12R,13S,14S)-12-[(2S,3R,4S,6R)-4-(Dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy-4-ethyl-5,5',6,11-tetrahydroxy-4'-methoxy-4',5,6',7,9,11,13-heptamethylspiro[3,15,17-trioxabicyclo[12.4.0]octadecane-16,2'-oxane]-2,8-dione (1)
(1R,4aR,7R,7aR)-7-[(4-carboxy-2,5-dihydroxybenzoyl)oxymethyl]-1-[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-carboxylic acid (1)
(1R,5S,6S)-5-hydroxy-7-oxabicyclo[4.1.0]hept-3-ene-3-carboxylic acid (1)
(1S,1'S,2R,2'R,5aR,5a'R,7aR,7bR,7a'R,7b'R,13aR,13a'R)-15,15'-oxybis(1,2,5a,7a,7b,10,10,13a-octamethyloctadecahydrochryseno[2,1-b]oxepine-4,11(1H,5aH)-dione) (1)
(1S,2S,4S,5S,5aR,6aR,7aS,8S,11aR,11bR,12aR)-8-(furan-3-yl)-1,7-dihydroxy-4-(2-methoxy-2-oxoethyl)-3,3,5,7a-tetramethyl-10,13-dioxododecahydro-8H-1,5-methanooxireno[2,3-g]oxireno[2',3':1,8]cycloocta[1,2-f]isochromen-2-yl (E)-2-methylbut-2-enoate (1)
(1S,3R,6S,7S,8R,11S,12S,16R)-7,12,16-Trimethyl-15-[(1S)-1-[(2S)-5-methyl-6-oxo-2,3-dihydropyran-2-yl]ethyl]-6-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxypentacyclo[9.7.0.01,3.03,8.012,16]octadecane-7-carboxylic acid (1)
(1S,3S,4S,6S,7S,8R,11S,12S,14S,15R,16R)-15-[(2S)-2,5-dihydroxy-5-(hydroxymethyl)-6-methylheptan-2-yl]-4,6,14-trihydroxy-7,12,16-trimethylpentacyclo[9.7.0.01,3.03,8.012,16]octadecane-7-carboxylic acid (1)
(1S,4R,10S,13S,16S,19S)-27-methoxy-13-[(4-methoxyphenyl)methyl]-4,12,16,18,32-pentamethyl-25-oxa-3,6,12,15,18,32-hexazapentacyclo[17.12.2.221,24.126,30.06,10]hexatriaconta-21,23,26,28,30(34),35-hexaene-2,5,7,11,14,17,33-heptone (1)
(2'R,3S,4R,4aR,7R,8R)-3-[(S)-furan-3-yl-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]-8-[(1S)-1-hydroxy-3-methoxy-3-oxopropyl]-7-(2-hydroxypropan-2-yl)-3,4a,8-trimethyl-5-oxospiro[2,6,7,8a-tetrahydro-1H-naphthalene-4,3'-oxirane]-2'-carboxylic acid (1)
(2,4-dihydroxy-3,5-dimethyl-6-(((2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-methyltetrahydro-2H-pyran-2-yl)oxy)phenyl)(phenyl)methanone (1)
(2-hydroxy-2-oxo-1,3,2$l^{5}-dioxaphospholan-4-yl)methyl (11Z)-octadec-11-enoate (1)
(2-{2-[(1R,16Z,24E,26E,28Z)-1,18-dihydroxy-19,30-dimethoxy-15,17,21,23,29,35-hexamethyl-2,3,10,14,20-pentaoxo-11,36-dioxa-4-azatricyclo[30.3.1.0,]hexatriaconta-16,24,26,28-tetraen-12-yl]propyl}-5-hydroxy-4-methoxycyclohexyl)oxidanesulfonic acid (1)
(20S)-12beta,20,25-Trihydroxy-3,4-seco-5alpha-dammara-4(28),23-dien-3-oic acid (1)
(22S,25S)-1b,3b,4b,5b,26,27-hexanol-furospirost-5,26-O-b-D-glucopyranoside (1)

First Public Date

2026 (3)
2023 (3)
2014 (2)
2024 (1)

Modification

1x(15)N labeled L-leucine (1)
2x(15)N labeled L-lysine (1)
4 (1)
4x(15)N labeled L-arginine (1)

Study type

ChIP-seq (41)
Transcription profiling by array (37)
RNA-seq of coding RNA (17)
ChIP-chip by tiling array (5)
Methylation profiling by array (4)
Unknown experiment type (3)
Comparative genomic hybridization by array (2)
RNA-seq of non coding RNA (2)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Genotyping by array (1)
Hi-C (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (71)
2025 (65)
2021 (65)
2023 (62)
2024 (56)
2020 (55)
2013 (44)
2019 (39)
2017 (36)
2015 (33)
2016 (30)
2018 (25)
2011 (21)
2014 (18)
2010 (18)
2012 (14)
2026 (10)
2009 (9)
2008 (9)
2005 (2)
2004 (2)
2006 (1)

Lab affiliation

Max Planck Institute for Molecular Biomedicine Bioanalytical Mass Spectrometry Röntgenstr. 20 48149 Münster Germany (5)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (4)
Lab of Proteome Research, Department of Molecular Biology and Genetics, Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia (4)
Finley and Gygi lab Cell Biology Department Harvard Medical School US (3)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (3)
Gansu Provincial Key Lab of Aridland Crop Science/ Gansu Agricultural University, Lanzhou, China (3)
Lab Head (3)
Max Planck Institute for Biophysical Chemistry; University Medical Center Goettingen (3)
Applied Proteomics Lab, Department of Biology, Maynooth University, Ireland. (2)
Bernstein Professor Emeritus in Adult Psychiatry Department of Psychiatry and Behavioral Sciences University of Minnesota Medical School (2)
CGSI - University of Wisconsin Madison. Sussman lab. (2)
Centre for Genomic Regulation (CRG), Barcelona, Spain (2)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (2)
Department of Biochemistry Biophysics and Structural Biology, Department of Biochemistry and Molecular Biophysics, Washington University in St. Louis, St. Louis, Missouri, United States (2)
Department of Chemistry and Biochemistry. University of Colorado, Boulder. Boulder, CO 80303 (2)
Head of research group Quantitative and Systems Biology; Max Planck Institute for Multidisciplinary Sciences; Goettingen (D); Germany (lab head). (2)
Lab. Neuro-oncologie en klinische en kanker proteomics Department of Neurology Erasmus MC (2)
Max Planck Institute for Moleclar Biomedicine Bioanalyticyl Mass Spectrometry Unit Röntgenstr. 20 48149 Münster Germany (2)
Max Planck Institute for Molecular Biomedicine Bioanalytical Mass Spectrometry Röntgenstr. 20 48149 Münster Germany (2)
Max Planck Institute for Molecular Biomedicine Bioanalytical Mass Spectrometry Unit Röntgenstr. 20 48149 Münster Germany (2)
Medizinische Biochemie und Molekularbiologie, Universität des Saarlandes, Gebäude 44, Kirrbergerstr. 100, 66421 Homburg, Deutschland, fone +49 (0)6841 1626510, fax +49 (0)6841 1626288 Nagarjuna Nagaraj, Max Planck Institute for Biochemistry, Core facility (contact) (2)
Research Group Leader Bulut-Karslioglu lab Dept. of Genome Regulation Max Planck Institute for Molecular Genetics Ihnestrasse 63-73 14195 Berlin GERMANY (2)
Winter Lab, CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria (2)
, Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (lab head) (1)
1 Department of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried, Germany, 2 TUM School of Natural Sciences, Technical University, Munich, Germany (1)
1. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany, 2. Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, United Kingdom; ( lab head ) (1)
1. Department of Renal Medicine, Flinders Medical Centre, South Australia, Australia. 2. College of Medicine and Public Health, Flinders University, South Australia, Australia. (1)
1Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA 2Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA 3Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA, USA (1)
1Department of Molecular Biology & 2LSI Genomics, Princeton University (1)
ADLQ (1)

Tags

xref:PubMed:25487987 (1)
xref:PubMed:37816332 (1)
xref:EuropePMC:PMC12218243 (1)
xref:PubMed:33911273 (1)

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Spatial metabolomics data of seed development in the soybean cultivar QiHuang No. 34. (MS Imaging)

Spatial metabolomics profiling was performed on materials collected from four stages of seed development (including the early maturation stage and three time points of the mid-maturation stage) of the soybean cultivar QH34 grown in a field environment. For spatial metabolomics, tissues were cryosect...

2026-10-21 | MTBLS16079 | MetaboLights

Systematic Discovery of Deeply Conserved Plant Protein Complexes, DSSO-crosslinked soy (Glycine max)

The associated files are mass spec data from size exclusion chromatography fractions that were subsequently crosslinked with DSSO. The starting material was a native extract prepared from soy sprouts (Glycine max). The mass spectrometry used a data-dependent MS2-MS3 method to identify crosslinks.

ORGANISM(S): Glycine max

2019-10-28 | PXD013704 | Pride

Comparison of the transcriptional response to ethanol in laboratory and wild yeast strains

An S288c-derived lab strain of Saccharomyces cerevisiae has lower ethanol resistance than either the vineyard strain M22 or the oak strain YPS163. We performed a 60 minute time-course experiment in the presence of 5% ethanol and compared the transcriptional response to ethanol between strains. We ...

ORGANISM(S): Saccharomyces cerevisiae

2010-12-17 | E-GEOD-22904 | biostudies-arrayexpress

Multiprincipal Element M₂ FeC (M = Ti,V,Nb,Ta,Zr) MAX Phases with Synergistic Effect of Dielectric and Magnetic Loss.

Not available

S-EPMC10074122 | biostudies-literature

Determination of Abundant Metabolite Matrix Adducts Illuminates the Dark Metabolome of MALDI-Mass Spectrometry Imaging Datasets

Spatial metabolomics using mass spectrometry imaging (MSI) is a powerful tool to map hundreds to thousands of metabolites in biological systems. One major challenge in MSI is the annotation of m/z values, which is substantially complicated by background ions introduced throughout the c...

2021-06-15 | MTBLS954 | MetaboLights

Mus musculus musculus x M. m. domesticus

Testis expression in Mus musculus domesticus x Mus musculus musculus hybrid zone mice

PRJNA261034 | ENA

Modular hip exoskeleton improves walking function and reduces sedentary time in community-dwelling older adults.

Not available

S-EPMC9801566 | biostudies-literature

Enhancing Green Ammonia Electrosynthesis Through Tuning Sn Vacancies in Sn-Based MXene/MAX Hybrids.

Not available

S-EPMC10792155 | biostudies-literature

Label Free BioID interaction datasets, Soderling Lab

Quantitative LC/MS/MS was performed on 2 uL (1 ug) of each sample, using a nanoAcquity UPLC system (Waters Corp) coupled to a Thermo Orbitrap Fusion Lumos high resolution accurate mass tandem mass spectrometer (Thermo) equipped with a FAIMSPro device via a nanoelectrospray ionization source. Briefly...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2024-06-25 | MSV000095141 | MassIVE

Genotyping of Cowpea using a Soybean Genome Array

Background:; Cowpea (Vigna unguiculata L. Walp) is an important food and fodder legume of the semiarid tropics and subtropics worldwide, especially in sub-Saharan Africa. High density genetic linkage maps are needed for marker assisted breeding but are not available for cowpea. A single feature poly...

ORGANISM(S): Vigna unguiculata

2008-04-07 | E-GEOD-10284 | biostudies-arrayexpress

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