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UnknownLFQ-Based Peptide and Protein Intensity Differential Expression Analysis.
Not available
S-EPMC10243145 | biostudies-literature
ProteomicsComparison of LFQ and TMT-based quantitative proteomics towards toxicology research
Here, we aimed to compare two of the most commonly used global proteomics strategies, label-free quantification (LFQ) and tandem mass tag-based quantification (TMT) to identify the most suitable tool for toxicology research questions on the systemic level. Using a biological case study of HepG2 expo...
ORGANISM(S): Homo sapiens (Human) 
2020-12-23 | PXD020248 | Pride
Toxicoproteomics Benzo[a]pyrene Tandem mass tag (tmt) Label free-quantification (lfq) Hepg2 
UnknownProteomics in Practice: A Case Study Highlighting Tandem Mass Tag-Based MS for Quantitative Profiling of Extracellular Vesicles and Application to Irradiated Fibroblasts.
Not available
S-EPMC12934204 | biostudies-literature
UnknownA Bioconductor workflow for processing, evaluating, and interpreting expression proteomics data.
Not available
S-EPMC10683783 | biostudies-literature
UnknownFLASHQuant: A Fast Algorithm for Proteoform Quantification in Top-Down Proteomics.
Not available
S-EPMC11525931 | biostudies-literature
ProteomicsBenchmarking LFQ, SILAC and MS2/MS3-based TMT quantification strategies for large-scale phosphoproteomics
Comprehensive mass spectrometry (MS)-based proteomics is now feasible, but reproducible and multiplexed quantification remains challenging especially for analysis of post-translational modifications (PTMs), such as phosphorylation. Here we compared the most popular quantification techniques for phos...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2018-03-13 | PXD007145 | Pride
Phosphoproteomics Ms3 Ms2 Tmt Silac Lfq Technical Benchmark Quantification 
ProteomicsEffects of contact allergens on THP-1 cells – LFQ- and SILAC-based untargeted proteomics
In this study, the effects of the contact allergens BQ, DNCB, NBB, Ni, and PPD were investigated in THP-1 cells. For this purpose, LFQ- and SILAC-based untargeted proteomics were applied.
ORGANISM(S): Homo sapiens (Human) 
2023-09-13 | PXD031017 | Pride
Silac Lfq Thp-1 Contact allergens 
UnknownAccurate Label-Free Quantification by directLFQ to Compare Unlimited Numbers of Proteomes.
Not available
S-EPMC10315922 | biostudies-literature
UnknownImputation of label-free quantitative mass spectrometry-based proteomics data using self-supervised deep learning.
Not available
S-EPMC11208500 | biostudies-literature
UnknownUrinary biomarker discovery in gliomas using mass spectrometry-based clinical proteomics.
Not available
S-EPMC7398313 | biostudies-literature
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