Liang Shanshan S

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Proteomics (6)
Transcriptomics (4)
Genomics (2)
Metabolomics (1)

Organisms

Homo sapiens (7)
Zea mays (2)
Cynoglossus semilaevis (1)
Saccharomyces cerevisiae (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (6)
iProX (5)
jPOST (1)
MetaboLights (1)

Technology Type

Mass spectrometry (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2021 (3)
2015 (2)
2025 (2)
2014 (1)
2009 (1)
2026 (1)
2022 (1)
2023 (1)
2024 (1)

CHEBI ID

CHEBI:10002 (1)
CHEBI:10022 (1)
CHEBI:10037 (1)
CHEBI:10070 (1)
CHEBI:10072 (1)
CHEBI:10106 (1)
CHEBI:101064 (1)
CHEBI:10138 (1)
CHEBI:10432 (1)
CHEBI:10577 (1)
CHEBI:10607 (1)
CHEBI:107634 (1)
CHEBI:107641 (1)
CHEBI:107662 (1)
CHEBI:11060 (1)
CHEBI:113528 (1)
CHEBI:113543 (1)
CHEBI:116314 (1)
CHEBI:122 (1)
CHEBI:132121 (1)
CHEBI:132244 (1)
CHEBI:132267 (1)
CHEBI:132471 (1)
CHEBI:132506 (1)
CHEBI:132634 (1)
CHEBI:132789 (1)
CHEBI:132793 (1)
CHEBI:132853 (1)
CHEBI:133348 (1)
CHEBI:134760 (1)

Metabolite Name

(+)-(s)-carvone (1)
(+)-ar-turmerone (1)
(+)-catechin (hydrate) (1)
(+/-)-c75 (1)
(+/-)-cannabichromeorcin (1)
(+/-)-cp 47,497-c7-hydroxy metabolite (1)
(-)-a-pinene (1)
(-)-camphanic acid (1)
(-)-camphor (1)
(-)-caryophyllene oxide (1)
(-)-epigallocatechin (1)
(-)-gallocatechin (1)
(-)-isopulegol (1)
(-)-pentazocine (1)
(-)-syringaresinol di-o-glucoside (1)
(1ar,2s,5s,6r,7r,7as)-5-methyl-1a-(3-methyl-2-buten-1-yl)-1a,3,5,6,7,7a-hexahydro-2h-oxireno[g]isochromene-2,6,7-triol (1)
(1r,3r,8s,10r,13s,16s,17r)-6,12,17-trihydroxy-16-methyl-8-(2-methyl-2-propanyl)-2,4,14,19-tetraoxahexacyclo[8.7.2.01,11 03,7 07,11 013,17]nonadecane-5,15,18-trione (1)
(1r,9r)-5-cyclohexyl-11-(propylsulfonyl)-7,11-diazatricyclo[7.3.1.02,7]trideca-2,4-dien-6-one (1)
(2e,4ar,6r,7s,8e,10r)-10-acetoxy-4a-hydroxy-1,1,3,6,9-pentamethyl-4-oxo-1a,4,4a,5,6,7,7a,10,11,11a-decahydro-1h-cyclopenta[a]cyclopropa[f][11]annulen-7-yl benzoate (1)
(2s,3s)-3,5,7-trihydroxy-6-methyl-2-(3,4,5-trihydroxyphenyl)-2,3-dihydro-4h-chromen-4-one (1)
(3ar,4s,6r,11ar)-6,9-dihydroxy-6,10-dimethyl-3-methylene-2,7-dioxo-2,3,3a,4,5,6,7,8,9,11a-decahydrocyclodeca[b]furan-4-yl methacrylate (1)
(3as,10ar,10br)-6,10a-dimethyl-3-methylene-3,3a,4,5,7,8,10a,10b-octahydrofuro[3',2':6,7]cyclohepta[1,2-b]pyran-2,9-dione (1)
(3e,12e)-3,12-dimethyl-8-methylene-6,18-dioxatricyclo[14.2.1.05,9]nonadeca-3,12,16(19)-triene-7,17-dione (1)
(4e)-1,7-bis(4-hydroxyphenyl)-4-hepten-3-one (1)
(5r,6s)-5-hydroxy-4-methoxy-6-(2-phenylethyl)-5,6-dihydro-2h-pyran-2-one (1)
(7r,8s)-7,8-dihydroxy-3,7-dimethyl-6-oxo-7,8-dihydro-6h-isochromene-5-carbaldehyde (1)
(8e)-11,13-dihydroxy-4-methyl-4,5,6,7-tetrahydro-2h-3-benzoxacyclododecine-2,10(1h)-dione (1)
(<u+00b1>)-abscisic acid (1)
1,3,5-trimethoxybenzene (1)
1,4-androstadiene-3,17-dione (1)

Study type

Transcription profiling by array (3)
Cell line - One-color microarray (1)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (2)
2015 (2)
2014 (1)
2009 (1)

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Serine and SAM responsive complex SESAME regulates histone modification crosstalk by sensing cellular metabolism

We report the genome-wide localization of SESAME and found that three SESAME subunits localized in the gene body. Examining the genome-wide localization of SESAME subunits (Sam1, Ser33, Pyk1) and Set1

ORGANISM(S): Saccharomyces cerevisiae

2015-11-04 | E-GEOD-72972 | biostudies-arrayexpress

Agilent Microarray of formalin-fixed, paraffin-embedded mesenteric adipose tissue associated with different amount of fibrosis from ileocolonic resection specimens of Crohn’s disease patients

In Crohn’s disease (CD) pathology, we observed that: 1) a continuous process of fibrosis includes all the layers of the intestine as well as the surrounding mesenteric adipose tissue (MAT); 2) the amount of fibrosis in the MAT varies between samples even within a single case. To further investigate...

ORGANISM(S): Homo sapiens

2021-07-16 | E-MTAB-8570 | biostudies-arrayexpress

Agilent Microarray of laser capture microdissected mesenteric adipose tissue from C57BL/6J mice with repeated endoscopic colon biopsies or from uninjured mice

We performed repeated endoscopic colon biopsies of C57BL/6J mice weekly and found that the mesenteric adipose tissue (MAT) was enlarged and it wrapped around the colon at wound sites after 4 cycles of biopsy. On histological view, fibrous bands extended from the intestine into the adjacent MAT, mimi...

ORGANISM(S): Mus musculus

2021-07-16 | E-MTAB-8566 | biostudies-arrayexpress

Gene expression profiles of nasopharyngeal carcinoma cell line HNE2 following TP53 overexpression

Recent studies have revealed that long non-coding RNAs (lncRNAs) participate in all steps of cancer initiation and progression by regulating protein coding genes at the epigenetic, transcriptional and post-transcriptional levels. LncRNAs are in turn regulated by other genes, forming a complex regula...

ORGANISM(S): Homo sapiens

2015-05-14 | E-GEOD-60379 | biostudies-arrayexpress

The telomere-to-telomere (T2T) genome of Peucedanum praeruptorum Dunn provides insights into the genome evolution and coumarin biosynthesis

BACKGROUND: Traditional Chinese medicine has used Peucedanum praeruptorum Dunn (Apiaceae) for a long time. Various coumarins, including the significant root constituents Praeruptorin (A-E), are the active constituents of the dried roots of P. praeruptorum. Previous trans...

2024-04-02 | MTBLS8679 | MetaboLights

Bone marrow gene expression of pediatric acute lymphoblastic leukemia (ALL)

Pediatric acute lymphoblastic leukemia (ALL) contains cytogenetically distinct subtypes that respond differently to cytotoxic drugs. Subtype classification can be also achieved through gene expression profiling. However, how to apply such classifiers to a single patient and correctly diagnose the di...

ORGANISM(S): Homo sapiens

2009-08-19 | E-GEOD-17703 | biostudies-arrayexpress

Gonadal DNA methylomes of half-smooth tongue sole Cynoglossus semilaevis

Environmental sex determination (ESD) occurs in divergent, phylogenetically unrelated taxa, and in some species co-occurs with genetic sex determination (GSD) mechanisms. Although epigenetic regulation in response to environmental effects has long been proposed to be associated with ESD, a systemic ...

ORGANISM(S): Cynoglossus semilaevis

2014-01-23 | E-GEOD-41129 | biostudies-arrayexpress

ZmbZIP39 coordinates source-flow-sink relations to boost grain filling in maize

The orchestration of source, flow, and sink is fundamental to efficient grain filling in maize, yet the regulatory network synchronizing these processes remains a major enigma. To identify key regulators, we used the sucrose transporter ZmSUT1, a critical component of the ‘flow’ pathway, as a molecu...

ORGANISM(S): Zea Mays

2025-10-24 | PXD069873 |

SnRK2.6 phosphorylates sucrose transporter ZmSUT1 to enhance yield by modulating leaf senescence in maize

SnRK2.6-mediated ZmSUT1 phosphorylation enhances maize yield.

ORGANISM(S): Zea Mays

2025-12-10 | PXD071793 |

Nuclear condensation of CDYL links histone crotonylation and cystogenesis in autosomal dominant polycystic kidney disease

We identify the Kcr sites on histones that are targeted by CDYL in ADPKD cells (WT9-12 cells). We chose to knock out CDYL in WT 9-12 cells (CDYL KO) through CRISPR/Cas9-mediated gene editing to increase the overall levels of histone Kcr. We quantified Kcr modifications on different histone residues ...

ORGANISM(S): Homo Sapiens

2022-01-17 | PXD031029 |

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