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TranscriptomicsNucleosome occupancy in yeast BY4741and a strain lacking MSN2 and MSN4 responding to 20 min treatment with 0.4mM H2O2
Numerous factors have been implicated in regulating gene expression changes, including changes to nucleosome occupancy. Here we followed dynamic changes to nucleosome occupancy, gene expression and DNA binding of the transcription factor Msn2p genome-wide in yeast cells responding to hydrogen perox...
ORGANISM(S): Saccharomyces cerevisiae S288c 
2012-06-17 | E-GEOD-30897 | biostudies-arrayexpress
GenomicsNucleosome occupancy dynamics in yeast BY4741 responding to 0.4mM H2O2 over time (0-60 min)
Numerous factors have been implicated in regulating gene expression changes, including changes to nucleosome occupancy. Here we followed dynamic changes to nucleosome occupancy, gene expression and DNA binding of the transcription factor Msn2p genome-wide in yeast cells responding to hydrogen perox...
ORGANISM(S): Saccharomyces cerevisiae S288c 
2012-06-18 | E-GEOD-30900 | biostudies-arrayexpress
TranscriptomicsDynamic changes to nucleosome occupancy and genomic expression in yeast responding to oxidative stress
This SuperSeries is composed of the following subset Series: GSE30897: Nucleosome occupancy in yeast BY4741and a strain lacking MSN2 and MSN4 responding to 20 min treatment with 0.4mM H2O2 GSE30898: Msn2p occupancy dynamics in yeast BY4741 responding to 0.4mM H2O2 over time (0-60 min) GSE30899: Gene...
ORGANISM(S): Saccharomyces cerevisiae S288c 
2012-06-17 | E-GEOD-30901 | biostudies-arrayexpress
ProteomicsA. muciniphila, B. longum, E. coli, headspace metabolites
Culture headspaces of A. muciniphila, B. longum, E. coli, and sterile media controls using sorbent tubes and GCMS (Figure 3C)
ORGANISM(S): Bifidobacterium Longum Subsp. Longum (ncbitaxon:1679) Escherichia Coli (ncbitaxon:562) Bhi-mucin Akkermansia Muciniphila (ncbitaxon:239935) 
2024-07-15 | MSV000095341 | MassIVE
ProteomicsExamples of output air collected from a mice ventilator
Examples of output air collected from a mice ventilator. mzML files used to generate Figure 6S C.
ORGANISM(S): C57bl/6 Mice 
2025-07-30 | MSV000098687 | MassIVE
UnknownSubtypes of anterior circulation large artery occlusions with acute brain ischemic stroke.
Not available
S-EPMC7044197 | biostudies-literature
ProteomicsBreath Metabolites from Healthy and Asthmatic Children
mzML files used to generate Figure 1 A-F, Figure S1 D-E, Figure 6 B, Figure S5 D-F. Breath samples collected from healthy and asthmatic children
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-07-15 | MSV000095340 | MassIVE
ProteomicsMetabolites from anaerobic culture headspace
This is GCxGC MS data from headspace VOCs from A. muciniphila, B. thetaiotaomicron, Collinsella aerofaciens, E. coli, and Ruminococcus torques and sterile media controls. Raw files in CDF format. (Fig 4A , Fig 5, Fig 3B from associated publication)
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Bacteroides Thetaiotaomicron (ncbitaxon:818) Collinsella Aerofaciens (ncbitaxon:74426) Akkermansia Muciniphila (ncbitaxon:239935) [ruminococcus] Torques (ncbitaxon:33039) 
2025-07-30 | MSV000098693 | MassIVE
ProteomicsThe exhaled breath of monocolonized mice
This is GCxGC MS raw data from exhaled breath from colonized gnotobiotic mice with one of five common gut commensals including A. muciniphila, B. thetaiotaomicron, Collinsella aerofaciens, E. coli, and Ruminococcus torques and sterile media controls. Raw files in CDF format. (Fig 4B, Fig 5 from asso...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Gnotobiotic Mice Bacteroides Thetaiotaomicron (ncbitaxon:818) Collinsella Aerofaciens (ncbitaxon:74426) Akkermansia Muciniphila (ncbitaxon:239935) [ruminococcus] Torques (ncbitaxon:33039) 
2025-07-30 | MSV000098692 | MassIVE
ProteomicsThe exhaled breath of humanized mice
This is GCxGC MS data from exhaled breath from humanized mice as well as germ-free controls. Raw files in CDF format (Figure S4D-F of associated publication)
ORGANISM(S): C57bl/6 Mice 
2025-08-15 | MSV000098837 | MassIVE
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