Lucas M M - OmicsDI

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Unknown (2576)
Transcriptomics (103)
Proteomics (91)
Genomics (17)
Metabolomics (13)
Models (2)
Genomic (1)

Organisms

Homo sapiens (88)
Mus musculus (39)
Saccharomyces cerevisiae (11)
Daphnia pulex (9)
Arabidopsis thaliana (5)
Rattus norvegicus (4)
Canis lupus familiaris (3)
Fasciola hepatica (3)
Macaca fascicularis (2)
Escherichia coli K-12 (2)
Danio rerio (2)
Arabidopsis (1)
Puccinia graminis f. sp. tritici (1)
Schizophyllum commune (1)
Lactococcus garvieae (1)
Aspergillus niger (1)
Cryptomonas sp. CPCC 336 (1)
Dicentrarchus labrax (1)
Toxoplasma gondii (1)
Mycobacterium avium (1)
Citrus sinensis (1)
Echinococcus granulosus (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Vibrio cholerae (1)
Caenorhabditis elegans (1)
Plasmodium falciparum (1)
Pseudomonas aeruginosa (1)
Sus scrofa (1)
cellular organisms (1)
Platynereis dumerilii (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (113)
pride (77)
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MassIVE (8)
EGA (5)
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PeptideAtlas (1)

Tissue

Cell culture (8)
Epithelial cell (8)
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Kidney (4)
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HEK-293T cell (2)
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Lung (2)
Malignant cell (2)
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Ovary (2)
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Barrett's esophagus (1)
Blood (1)
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Breast (1)
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Esophagus (1)

Disease

Breast cancer (2)
Malignant neoplasm of ovary (2)
Tumor (1)
Renal cell carcinoma (1)
Acute leukemia (1)
Barrett's esophagus (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Cancer (1)
Chronic lymphocytic leukemia (1)
Colon cancer (1)
Colon mucinous adenocarcinoma (1)
Esophageal carcinoma (1)
Glioblastoma (1)
Human cytomegalovirus infection (1)
Kidney cancer (1)
Lung cancer (1)
Male infertility (1)
Mucinous adenocarcinoma (1)
Non-small cell lung carcinoma (1)
Ovarian serous carcinoma (1)
Prostate adenocarcinoma (1)
Pulmonary tuberculosis (1)
Salivary gland carcinoma (1)

Technology Type

Mass Spectrometry (77)
Shotgun proteomics (25)
Bottom-up proteomics (19)
Data-dependent acquisition (14)
SWATH MS (13)
Mass spectrometry (9)
Top-down proteomics (9)
Gel-based experiment (7)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-independent acquisition (4)
Mass spectrometry assay (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Mass spectrometry imaging (2)
COMPLETE_GENOMICS, Complete Genomics (1)
DiaPASEF (1)
Glycoproteomics (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Illumina HiSeq 1500 (4)
Q Exactive (3)
Liquid Chromatography MS - negative - hilic (3)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 4000 (2)
SYNAPT G2-Si (2)
TSQ Altis (2)
Xevo G2 XS Tof (2)
Xevo G2-XS QTof (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - hilic (2)
Ion Torrent S5 (1)
NanoDrop (1)
Illumina HiSeq 1000 (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
LTQ FT (1)
MaXis (1)
Bruker timsTOF Pro (1)
LTQ Orbitrap Elite (1)
MaXis II (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - alternating - hilic (1)
MS Imaging - (1)

Publication Date

2011 (23)
2010 (22)
2022 (17)
2025 (16)
2026 (15)
2023 (15)
2024 (14)
2021 (14)
2015 (14)
2014 (13)
2012 (11)
2019 (9)
2013 (7)
2009 (7)
2018 (4)
2017 (4)
2020 (3)
2016 (2)
2008 (2)
2007 (1)
2006 (1)

UNIPROT ID/AC

O04291 (1)
P49678 (1)
Q940Y5 (1)
Q96247 (1)
Q9LTS3 (1)
Q9S7Z8 (1)
Q9SB04 (1)
Q9SL42 (1)
Q9SSC9 (1)
A0A024RAN2 (1)
A0A024RC46 (1)
A0A075B6P5 (1)
A0A087WT59 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1V9 (1)
A0A087X232 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0B4J1V0 (1)
A0M8Q6 (1)
A0N5G5 (1)
A0N7I9 (1)
A0N7J6 (1)
A2IPI2 (1)
A2IPI4 (1)
A2IPI5 (1)
A2IPI6 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:16335 (3)
CHEBI:16704 (3)
CHEBI:16750 (3)
CHEBI:16856 (3)
CHEBI:17562 (3)
CHEBI:17596 (3)
CHEBI:30769 (3)
CHEBI:6650 (3)
CHEBI:15422 (2)
CHEBI:15756 (2)
CHEBI:15843 (2)
CHEBI:15891 (2)
CHEBI:16020 (2)
CHEBI:16027 (2)
CHEBI:16196 (2)
CHEBI:16761 (2)
CHEBI:16870 (2)
CHEBI:16919 (2)
CHEBI:17239 (2)
CHEBI:17351 (2)
CHEBI:17552 (2)
CHEBI:17659 (2)
CHEBI:17802 (2)
CHEBI:178090 (2)
CHEBI:178091 (2)
CHEBI:178092 (2)
CHEBI:17858 (2)
CHEBI:18132 (2)
CHEBI:18237 (2)
CHEBI:23530 (1)

Metabolite Name

Adenosine (3)
Cytidine (3)
Fumarate (3)
Inosine (3)
1-methyladenosine (2)
1-methylguanosine (2)
1-methylinosine (2)
1-methylpseudouridine (2)
2'-O-methyladenosine (2)
2'-O-methylcytidine (2)
2'-O-methylguanosine (2)
2'-O-methylinosine (2)
2'-O-methyluridine (2)
2-methyladenosine (2)
2-methylguanosine (2)
3-hydroxybutyric acid (2)
3-methylcytidine (2)
3-methylpseudouridine (2)
3-methyluridine (2)
4-methylcytidine (2)
5-methylcytidine (2)
5-methyluridine (2)
6-methyladenosine (2)
7-methylguanosine (2)
8-methyladenosine (2)
ADP (2)
AMP (2)
ATP (2)
Arachidonic acid (2)
CDP (2)

First Public Date

2022 (1)
2019 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Department of Biology, Institute of Microbiology, ETH Zürich, Switzerland (4)
La Trobe University, Melbourne, Australia (2)
Laboratory of Parasitology, Institute of Natural Resources and Agrobiology of Salamanca (IRNASA-CSIC), C/Cordel de Merinas 40-52, 37008 Salamanca, Spain (2)
The University of Melbourne (2)
Unité Molécules de Communication et Adaptation des Microorganismes (MCAM), Muséum National d’Histoire Naturelle (MNHN), CNRS, UMR 7245, Paris, France (2)
1) Department II of Internal Medicine and Center for Molecular Medicine Cologne, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany 2) CECAD, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany (1)
Agricultural and Plant Biochemistry and Proteomics Research Group, Dept. of Biochemistry and Molecular Biology, University of Cordoba, Agrifood Campus of International Excellence (ceiA3), 14071 Cordoba, Spain (1)
Associate Professor in Molecular Reproductive Biology, Discovery and Translational Sciences Department, Leeds Institute of Cardiovascular and Metabolic Medicine (LICAMM), Faculty of Medicine and Health Sciences, University of Leeds, UK (1)
Biochemistry and Molecular Biology, Munger Lab, University of Rochester, USA (1)
Biological Engineering, MIT (1)
Biological Sciences University of Southampton (1)
CBMA - Univeristy of Minho (1)
CECAD-Cluster of Excellence, University of Cologne, Joseph-Stelzmann-Str. 26, D-50931, Cologne, Germany; Department II of Internal Medicine, Faculty of Medicine and University Hospital Cologne, University of Cologne, Kerpener Str. 62, D-50937, Cologne, Germany; Center for Molecular Medicine Cologne (CMMC), University of Cologne, Robert-Koch-Str. 21, D-50931, Cologne, Germany (1)
CINVESTAV Unidad Irapuato (1)
Centre for Genomic Regulation, Barcelona, Spain (1)
Centre for Genomics and Computational Biology Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ Tel: +44 (0)20 7882 8266 (1)
Chief Scientific Officer, Sangui Bio (1)
Children's Medical Research Institute (1)
Children's Medical Research Institute, Faculty of Medicine and Health, Westmead, NSW, Australia (1)
Children's Medical Research Institute. Telomere Length Regulation Unit. (1)
Dana-Farber Cancer Institute (1)
Department of Biochemistry, Mass Spectrometry Incubator, Virginia Polytechnic Institute and State University (1)
Department of Chemistry, Imperial College London, United Kingdom (1)
Department of Chemistry, Yale University, New Haven, CT 06520 (1)
Department of Medicine and Animal Surgery, Faculty of Veterinary Science, University of Murcia, Murcia, Spain (1)
Department of Molecular Life Sciences, University of Zurich, Switzerland (1)
Department of Molecular Life Sciences, University of Zurich, Zurich, Switzerland (1)
Department of Neurology, Clinical Neuroscience Center, University Hospital and University of Zurich; Zurich, Switzerland (1)
Department of Oncology, Institute of Clinical Sciences, Sahlgrenska Academy, University of Gothenburg (1)
Department of Pediatrics Medizinische Fakultät Carl Gustav Carus Technische Universität Dresden 01307 Dresden, Germany (1)

IsPrivate

False (2)

Modification

0.984 (1)
15.99491 (1)
57.02146 (1)

Study type

Transcription profiling by array (63)
RNA-seq of coding RNA (13)
Comparative genomic hybridization by array (7)
Transcription profiling by tiling array (5)
ChIP-seq (5)
RNA-seq of non coding RNA (4)
Unknown experiment type (3)
Methylation profiling by high throughput sequencing (3)
ChIP-chip by array (2)
DNA-seq (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Cell line - High-throughput sequencing (1)
Other (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (311)
2023 (304)
2021 (295)
2025 (273)
2024 (270)
2020 (173)
2019 (158)
2018 (123)
2017 (107)
2016 (97)
2015 (94)
2014 (90)
2011 (74)
2010 (62)
2012 (54)
2013 (50)
2009 (45)
2026 (44)
2008 (21)
2007 (13)
2006 (10)
2004 (5)
2005 (4)
2003 (4)
2001 (3)
2000 (2)
2002 (1)
1999 (1)
1998 (1)

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Chromatin immunopreciptiation of human lymphoblastoid untreated and treated with aphidicolin (APH), trichostatin A (TSA), or APH plus TSA cells to map the origins of DNA replication at common fragile sites

Map the origins of DNA replication in human cells at 7 common fragile sites and their flanking non-fragile sequences as well as a 200kb containing the rare fragile site FRAXA, and a 1,075kb non-fragile region on chr22 . The origins were mapped in untreated cells, as well as, in cells treated with ap...

ORGANISM(S): Homo sapiens

2010-02-27 | E-TABM-348 | biostudies-arrayexpress

A versatile inducible plant model system for dissecting p53 function and discovering novel interaction networks

With the aim of revealing potential conserved or novel regulatory partners that could explain the phenotypes present on plant cells expressing p53, we performed p53-immunoprecipitation in combination with mass spectrometry (IP-MS) on 3-week-old XVE:p53 root cultures treated with DMSO (control) or 10...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2026-06-20 | PXD075858 | Pride

Arabidopsis P53

PEPCK-M recoups tumor cell anabolic potential in a PKC-ζ-dependent manner.

Not available

S-EPMC7791766 | biostudies-literature

vsp gene expression by Giardia lamblia clone GS/M-83-H7 during antigenic variation in vivo and in vitro.

Not available

S-EPMC98636 | biostudies-literature

Recombinant Myxoma Virus-Derived Immune Modulator M-T7 Accelerates Cutaneous Wound Healing and Improves Tissue Remodeling.

Not available

S-EPMC7690590 | biostudies-literature

Harmonised LUCAS in-situ land cover and use database for field surveys from 2006 to 2018 in the European Union.

Not available

S-EPMC7567823 | biostudies-literature

C. elegans srGAP is an α-catenin M domain-binding protein that strengthens cadherin-dependent adhesion during morphogenesis.

Not available

S-EPMC10655919 | biostudies-literature

Evolutionary Diversification of Duplicated Genes; Experiments B-I, M-P

This study measured the rates at which duplicated genes in the Daphnia pulex genome diverge in function, based on significant differences in their gene expression when paralogs of various ages were tested across 8 to 12 contrasting conditions. The conditions were designated A to L. The number and d...

ORGANISM(S): Daphnia pulex

2011-02-01 | E-GEOD-25843 | biostudies-arrayexpress

A robust COVID-19 mortality prediction calculator based on Lymphocyte count, Urea, C-Reactive Protein, Age and Sex (LUCAS) with chest X-rays.

Not available

S-EPMC9617052 | biostudies-literature

Mass spectrometry of neuroblastoma organoids

Collect proteomic data for organoids from relapsed neuroblastoma patients

ORGANISM(S): Homo sapiens (Human)

2025-05-06 | PXD051208 | Pride

Neuroblastoma Dia Organoids

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2803 Results

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