Lund P P - OmicsDI

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Unknown (7319)
Proteomics (170)
Transcriptomics (112)
Genomics (62)
Metabolomics (5)
Genomic (2)

Organisms

Bombyx mori (163)
Onchocerca volvulus (163)
Klebsiella pneumoniae (163)
Musca domestica (163)
Brugia malayi (163)
Schizosaccharomyces pombe (163)
Cnidaria (163)
Streptomyces coelicolor A3(2) (163)
Sus scrofa (163)
Human immunodeficiency virus 1 (163)
Oryza sativa Indica Group (163)
Sinorhizobium meliloti BL225C (163)
Vitis (163)
Sus scrofa domesticus (163)
Ostreococcus tauri (163)
Saccharomyces cerevisiae (163)
Synechocystis sp. PCC 6803 (163)
Homo sapiens (103)
Mus musculus (16)
Streptococcus suis (4)
Rattus norvegicus (4)
Caenorhabditis elegans (3)
Escherichia coli (2)
Sus scrofa (2)
Pseudomonas syringae (1)
Pseudomonas syringae pv. syringae B728a (1)
Rattus rattus (1)
Escherichia coli K-12 (1)
Gallus gallus (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Organisms

Homo sapiens (16)
Paxillus involutus (2)
Pseudozyma hubeiensis (2)
Phrynocephalus vlangalii (1)
Paxillus involutus ATCC 200175 (1)
soil metagenome (1)
Mus musculus (1)

Repository

pride (163)
biostudies-arrayexpress (113)
ENA (34)
EGA (26)
MassIVE (7)
MetaboLights (5)
dbGaP (2)
geo (2)

Tissue

Cell culture (24)
Brain (15)
Epithelial cell (13)
Lung (11)
Liver (9)
Blood plasma (8)
Bone marrow (7)
Kidney (6)
Lymph node (5)
Fibroblast (5)
Permanent cell line cell (5)
Articular cartilage (4)
Embryonic stem cell (4)
Blood (4)
Breast cancer cell (3)
Hemolymph (3)
Retina (3)
Melanocyte (3)
Skin (3)
Egg (3)
Early embryonic cell (3)
Cell suspension culture (3)
B cell (3)
Blood cell (3)
Soft tissue sarcoma cell (2)
Hematopoietic multipotent progenitor cell (2)
Rheumatoid arthritis disease specific synovial fluid (2)
Breast epithelial cell (2)
Wound fluid (2)
Follicular fluid (2)

Disease

Breast cancer (7)
Acute leukemia (7)
Osteoarthritis (5)
Brain cancer (4)
Diabetic nephropathy (3)
Skin melanoma (3)
Alzheimer's disease (3)
Type 2 diabetes mellitus (3)
Myeloid leukemia (2)
Lung small cell carcinoma (2)
Type 1 diabetes mellitus (2)
Chronic obstructive pulmonary disease (2)
Lung adenocarcinoma (2)
Lymphoma (2)
Melanoma (2)
Malignant neoplasm of ovary (2)
Juvenile rheumatoid arthritis (2)
Disease free (2)
Colonic adenocarcinoma (1)
Glioblastoma (1)
Alcohol-associated liver disease (1)
Rabies (1)
Myelodysplastic syndrome (1)
Arthritis (1)
Postural orthostatic tachycardia syndrome (1)
Progressive myoclonus epilepsy (1)
Meningitis (1)
Retinitis pigmentosa (1)
Allergic asthma (1)
Duchenne muscular dystrophy (1)

Technology Type

Mass Spectrometry (163)
Shotgun proteomics (87)
Bottom-up proteomics (35)
Data-independent acquisition (20)
Data-dependent acquisition (18)
SWATH MS (15)
Affinity purification coupled with mass spectrometry proteomics (15)
Mass spectrometry (4)
Gel-based experiment (3)
Top-down proteomics (3)
DiaPASEF (2)
SRM/MRM (2)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0- (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Mass spectrometry assay (1)
Mass spectrometry imaging (1)
MSE (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
NextSeq 500 (4)
Liquid Chromatography MS - positive - reverse phase (3)
Sony SH800 (2)
Q Exactive HF (2)
Q Exactive (2)
Q Exactive HF-X (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Genepix 4000A array scanner (1)
Advalytix Slide Booster (1)
Illumina NovaSeq X (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
TimsTOF Pro (1)
Diode array detection MS - alternating - reverse phase (1)
LECO Pegasus III (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2025 (29)
2026 (27)
2022 (24)
2024 (23)
2021 (22)
2010 (19)
2015 (18)
2023 (17)
2020 (15)
2012 (15)
2019 (15)
2016 (12)
2013 (11)
2014 (10)
2017 (8)
2011 (7)
2008 (5)
2018 (4)
2009 (3)
2005 (3)
2007 (1)
2006 (1)

CHEBI ID

CHEBI:48430 (3)
CHEBI:17050 (3)
CHEBI:16750 (3)
CHEBI:28875 (3)
CHEBI:28842 (3)
CHEBI:15428 (3)
CHEBI:16958 (3)
CHEBI:15741 (3)
CHEBI:16865 (3)
CHEBI:16196 (3)
CHEBI:7916 (3)
CHEBI:15891 (3)
CHEBI:15843 (3)
CHEBI:16704 (3)
CHEBI:18012 (3)
CHEBI:32816 (3)
CHEBI:16027 (3)
CHEBI:30915 (3)
CHEBI:17596 (3)
CHEBI:15756 (3)
CHEBI:17351 (3)
CHEBI:17368 (3)
CHEBI:30769 (3)
CHEBI:49059 (2)
CHEBI:30813 (2)
CHEBI:41941 (2)
CHEBI:73025 (2)
CHEBI:17626 (2)
CHEBI:16070 (2)
CHEBI:28238 (2)

Metabolite Name

Uracil (2)
Oleic acid (2)
1-(2-methoxy-docosanyl)-sn-glycero-3-phosphoethanolamine (1)
PS(10:0/10:0) (1)
10E-Pentadecen-6,8-diynoic acid (1)
Estra-1,3,5(10),7-tetraene-3,17alpha-diol (1)
(¡À)-1-(4-Methylphenyl)ethanol (1)
2-Hydroxyimipramine glucuronide (1)
9-hydroxy-10Z-octadecenoic acid (1)
L-threo-Sphingosine C-18 (1)
PC(0:0/18:0)[S] (1)
3alpha-Hydroxy-5beta-chol-14-en-24-oic Acid (1)
5,7,3'-Trihydroxy-4'-methoxyflavanone 7-(2,6-dirhamnosylglucoside) (1)
3alpha,21-Dihydroxy-D-homo-5beta-pregn-17a(20)-en-11-one (1)
12S-hydroxy-5Z,8E,10E-heptadecatrienoic acid (1)
11-deoxy-PGF1beta (1)
Diethyltoluamide (1)
SALSOLINE (1)
6-bromo-docosa-5E,9Z-dienoic acid (1)
Mono-methyl-adipate (1)
7alpha,17beta-Dihydroxy-17alpha-methylandrost-4-en-3-one (1)
9-oxo-10,12-octadecadienoic acid (1)
Warfarin alcohol (1)
17-Methylandrost-5-ene-3beta,11beta,17beta-triol (1)
PGF2alpha 1,11-lactone (1)
PA(20:5(5Z,8Z,11Z,14Z,17Z)/0:0) (1)
PGF2alpha Alcohol (1)
2alpha-(Hydroxymethyl)-5alpha-androstane-3beta,17beta-diol (1)
9-hydroxy-12Z-octadecenoic acid (1)
Nicotinic acid riboside (1)

First Public Date

2014 (8)
2022 (5)
2020 (4)
2026 (3)
2024 (3)
2023 (3)
2018 (2)
2025 (1)
2021 (1)
2019 (1)
2017 (1)
2016 (1)
2015 (1)

Modification

4x(2)H labeled dimethylated residue (1)
N6 (1)
Not available (1)

Study type

Transcription profiling by array (77)
RNA-seq of coding RNA (9)
Comparative genomic hybridization by array (5)
Transcription profiling by tiling array (4)
Unknown experiment type (3)
RNA-seq of total RNA (3)
Bisulfite-seq (2)
ChIP-seq (2)
Methylation profiling by array (2)
ChIP-chip by tiling array (1)
Cell line - High-throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (779)
2025 (759)
2021 (758)
2023 (735)
2024 (626)
2020 (595)
2019 (546)
2018 (464)
2017 (395)
2016 (344)
2015 (292)
2014 (239)
2013 (158)
2012 (151)
2010 (125)
2026 (115)
2011 (107)
2009 (64)
2008 (48)
2007 (37)
2006 (27)
2005 (24)
2003 (12)
2004 (11)
2002 (6)
2001 (5)
1999 (5)
2000 (2)
1998 (2)
1997 (1)

Lab affiliation

Department of Immunotechnology, Lund University (6)
Lund University (5)
Lund Stem Cell Center, Division of Molecular Hematology, Lund University, Lund, Sweden (4)
Proteomic Hematology Department of Experimental Medical Science Lund Stem Cell Center, Lund University (3)
Department of Immunotechnology, Lund University, Lund, Sweden (3)
Department of Surgery, Erasmus MC-University Medical Center, Rotterdam, The Netherlands. (3)
Institute of Clinical Sciences, Department of Oncology, Lund University, Sweden (2)
Div. Clinical Protein Science and Imaging, Dept. of Clinical Sciences and Dept. of Biomedical Engineering, Lund University, Sweden (2)
Clinical Sciences, Lund University, Sweden (2)
Proteomic Hematology, Department of Experimental Medical Science, Lund Stem Cell Center, Lund University (2)
Université Paris Cité, CNRS, Institut Jacques Monod, F-75013 Paris, France (2)
Division of Clinical Protein Science & Imaging, Department of Clinical Sciences (Lund), Department of Biomedical Engineering, Lund University, Lund, Sweden (2)
Division of Surgery, Oncology, and Pathology, Department of Clinical Sciences. Biomedical Center – Lund University, Solvegatan 19, 223 62, Lund, Sweden (2)
Keck MS & Proteomics Resource Yale School of Medicine (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
Department of Pediatrics, Clinical Sciences Lund, Lund University, Lund, Sweden (2)
PI BSBE PROTEOMICS LAB IIT BOMBAY (1)
PROFESSOR, PI, PROTEOMICS LAB, DEPARTMENT OF BIOSCIENCES AND BIOENGINEERING, IIT BOMBAY (1)
PROFESSOR, PRINCIPLE INVESTIGATOR, PROTEOMICS LAB, BSBE, IIT BOMBAY (1)
PROFESSOR, PRINCIPLE INVESTIGATOR, PROTEOMICS LAB, DEPARTMENT OF BIOSCIENCES AND BIOENGINEERING, IIT BOMBAY (1)
Izabela Sumara, Institute of Genetics and Molecular and Cellular Biology (IGBMC), Illkirch, France (1)
Lung Biology, Department of Experimental Medical Science, Lund University, Lund, Sweden. (1)
Division of Infection Medicine, Department of Clinical Sciences, Lund, Lund University, Biomedical Center, Tornavägen 10, SE-22184 Lund, Sweden (1)
Institute of Molecular Systems Biology D-BIOL ETH Zurich Switzerland (1)
IKVL, Lund University, Lund, Sweden (1)
Inserm UMRS 1256 N-GERE (Nutrition-Genetics-Environmental Risks) (1)
UMR7338, Developmental and stem cell biology, Pasteur Institut, FRANCE (1)
Div. Clinical Protein Science & Imaging Clinical Sciences & Biomedical Engineering Lund University Sweden (1)
Immunotechnology dept., Lund University, Sweden (1)
Department of Translational Medicine, Lund University, Sweden (1)

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(p)ppGpp controls stringent factors by exploiting antagonistic allosteric coupling between catalytic domains

Escherichia coli RelA is a ribosomal factor with strong (p)ppGpp synthesis activity that is dramatically activated in the presence of deacylated tRNA in the ribosomal A-site. RelA is a unique enzyme in that it is directly positively regulated by its product, alarmone nucleotide (p)ppGpp. Using HDX-M...

ORGANISM(S): Escherichia coli

2021-08-11 | PXD019953 | Pride

Escherichia coli / stringent response / rela / (p)ppgpp

Low-Protein Infant Formula Enriched with Alpha-Lactalbumin during Early Infancy May Reduce Insulin Resistance at 12 Months: A Follow-Up of a Randomized Controlled Trial.

Not available

S-EPMC11013926 | biostudies-literature

Rabies virus P protein binds to TBK1 and interferes with the formation of innate immunity-related liquid condensates

Viruses must overcome the interferon-mediated antiviral response to replicate and propagate into their host. Rabies virus (RABV) phosphoprotein P is known to inhibit interferon induction. Here, using a global mass spectrometry approach, we show that RABV P binds to TBK1, a kinase located at the cros...

ORGANISM(S): Homo sapiens (Human)

2025-09-11 | PXD063965 | Pride

Viral Tbk1 Virus Interferon Factories Liquid condensates Rabies

Comparing the Clinical Utility and Diagnostic Performance of CSF P-Tau181, P-Tau217, and P-Tau231 Assays.

Not available

S-EPMC8605616 | biostudies-literature

Diagnostic and prognostic performance to detect Alzheimer's disease and clinical progression of a novel assay for plasma p-tau217.

Not available

S-EPMC9107269 | biostudies-literature

Cellular localization of p-tau217 in brain and its association with p-tau217 plasma levels.

Not available

S-EPMC8734209 | biostudies-literature