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ProteomicsAn omics-based metabolic model of methane-driven denitrification by aerobic methanotrophic bacteria
Methylomonas denitrificans is the first characterized organism that couples methane oxidation to nitrate reduction in pure culture without a partner. The aim of this study is to develop a metabolic model of methane driven nitrate respiration using a multi-level omics approach. Samples of M. denitrif...
ORGANISM(S): Methylomonas denitrificans 
2025-09-17 | PXD004041 | Pride
Methane Denitrification Omics Hypoxic Methylomonas Respiration Methanotroph Nitrous oxide Nitrate 
ProteomicsParallel Reaction Monitoring on a Q Exactive Mass Spectrometer Increases Reproducibility of Phosphopeptide Detection in Bacterial Phosphoproteomics Measurements
Increasing number of studies report the relevance of protein Ser/Thr/Tyr phosphorylation in bacterial physiology, yet the analysis of this type of modification in bacteria still presents a considerable challenge. Unlike in eukaryotes, where tens of thousands of phosphorylation events likely occupy m...
ORGANISM(S): Escherichia coli 
2018-06-05 | PXD008211 | Pride
Lc-msms Phosphoproteomics Tio2 Prm E.coli Qexactive Dda 
UnknownGardening in the zone of death: an experimental assessment of the absolute elevation limit of vascular plants.
Not available
S-EPMC4829891 | biostudies-literature
ProteomicsPhosphoproteome Dynamics Mediate Revival of Bacterial Spores
Background: Bacterial spores can remain dormant for decades, yet harbor the exceptional capacity to rapidly resume metabolic activity and recommence life. Although germinants and their corresponding receptors have been known for more than 30 years, the molecular events underlying this remarkable cel...
ORGANISM(S): Bacillus subtilis 
2015-08-27 | PXD002559 | Pride
Bacillus subtilis  spore  phosphoproteome  germination 
UnknownIntegrating morphological, anatomical, and physiological traits to explain elevational distributions in Himalayan steppe and alpine plants.
Not available
S-EPMC12498082 | biostudies-literature
MetabolomicsHorizontal Transfer of Bacteriocin Biosynthesis Genes Requires Metabolic Adaptation To Improve Compound Production and Cellular Fitness

Biosynthetic gene clusters (BGCs) encoding the production of bacteriocins are widespread among bacterial isolates and are important genetic determinants of competitive fitness within a given habitat. Staphylococci produce a tremendous diversity of compounds, and the corresponding BGCs are frequen...

2022-11-09 | MTBLS5196 | MetaboLights
UnknownBacterial single-stranded DNA-binding proteins are phosphorylated on tyrosine.
Not available
S-EPMC1405823 | biostudies-literature
ProteomicsStoichiometry of the bacterial type III secretion export apparatus
Bacterial type III secretion systems are cell envelope-spanning effector protein-delivery machines essential for colonization and survival of many Gram-negative pathogens and symbionts. The membrane-embedded core unit of these secretion systems is termed needle complex. The needle complex is compose...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 
2016-02-25 | PXD003113 | Pride
Mass spectrometry Stoichiometry Salmonella Type iii secretion 
UnknownVegetation dynamics at the upper elevational limit of vascular plants in Himalaya.
Not available
S-EPMC4855180 | biostudies-literature
UnknownHigh-resolution microclimatic grids for the Bohemian Forest Ecosystem based on in situ measurements.
Not available
S-EPMC12913920 | biostudies-literature
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