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ProteomicsData extraction from proteomics raw data:an evaluation of nine tandem MS tools using a large Orbitrap data set
Data extraction from proteomics raw data:an evaluation of nine tandem MS tools using a large Orbitrap data set
ORGANISM(S): Homo sapiens (Human) hybrid Escherichia coli Schizosaccharomyces pombe 
2012-09-01 | PRD000711 | Pride
ProteomicsRat cardiac mitochondrial proteome and phosphoproteome
Female Sprague-Dawley rats were randomly separated into two groups: i) trained (Ex group) and ii) sedentary (Cont group). Animals from the Ex group were adapted to treadmill exercise for two consecutive weeks, involving a gradual increase in the running time till 60 min/day at 20 m/min, 0% grade, 5...
ORGANISM(S): Rattus norvegicus (Rat) 
2014-02-14 | PXD000354 | Pride
Lc-msms Mithocondria Phosphoproteome Rat Fasp Cardiac muscle 
TranscriptomicsWidespread Generation of Alternative UTRs Contributes to Sex-specific RNA Binding by UNR
Upstream of N-ras (UNR) is a conserved RNA-binding protein that regulates mRNA translation and stability by binding to sites generally located in untranslated regions (UTRs). In Drosophila, sex-specific binding of UNR to msl2 mRNA and the non-coding RNA roX plays key roles in the control of X-chromo...
ORGANISM(S): Drosophila melanogaster 
2011-10-25 | E-GEOD-33178 | biostudies-arrayexpress
ProteomicsProfiling the secretome and extracellular proteome of the potato late blight pathogen Phytophthora infestans
Oomycetes are filamentous organisms that cause notorious diseases, several of which with high economic impact. Well known is Phytophthora infestans, the causal agent of potato late blight. Previously, in silico analyses of the genome and transcriptome of P. infestans resulted in the annotation of a ...
ORGANISM(S): Phytophthora infestans 
2016-07-09 | PXD000802 | Pride
Virulence Oomycete Extracellular proteome Secretome Phytophthora 
UnknownPotential role of a reduced nephron endowment and impaired kidney functional reserve in the pathogenesis of hypertensive disorders of pregnancy.
Not available
S-EPMC12630276 | biostudies-literature
TranscriptomicsThe propagation of perturbations in shuffled bacterial gene networks
This dataset contains transcription profiles of TOP10 E.coli transformed with 85 rewired network plasmids first described in: Evolvability and hierarchy in rewired bacterial gene networks. Nature 452:840-5 (2008). The data are described and analysed in an accompanying paper Baumstark et al.,The pr...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2015-12-14 | E-MTAB-3233 | biostudies-arrayexpress
GenomicsCustom 192-plex
VeraCode GoldenGate GT Assay technology
EGAD00010000853 | EGA
GenomicsSNP genotyping data in genes related to trace element homeostasis
In this study we provide data regarding sample charactheristics and genotypes in 150 human samples of European origin for SNPs located around genes related to metal homeostasis. SNPs were genotyped with the Illumina VeraCode technology (192-plex format). The genotyped SNPs were used to identify quan...
EGAS00001001292 | EGA
GenomicsUPF - Evolutionary Population Genetics lab Data Access Committee
Data Access Committee EGAC00001000244
EGAC00001000244 | EGA
TranscriptomicsComparison of WAT CD34+ vs LAF CD34+
A catalytic role has been proposed in neoplastic angiogenesis and cancer progression for bone marrow-derived endothelial progenitor cells (EPCs). However, in preclinical and clinical studies the quantitative role of marrow-derived EPCs in cancer vascularization was found to be extremely variable. Ad...
ORGANISM(S): Homo sapiens 
2011-08-15 | E-GEOD-31415 | biostudies-arrayexpress
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