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ProteomicsAn integrated workflow for cross-linking/mass spectrometry
We present a concise workflow to enhance the mass spectrometric detection of cross-linked peptides by introducing sequential digestion and the database search software Xi. We use sequential digestion to reduce the peptide size and increase identification rates. The methodology is independent of samp...
ORGANISM(S): Bos taurus (Bovine) Homo sapiens (Human) Gallus gallus (Chicken) Saccharomyces cerevisiae (Baker's yeast) Chaetomium thermophilum Equus caballus (Horse) 
2019-08-27 | PXD008550 | Pride
Xi Sequential digestion Cross-linking mass spectrometry 
ProteomicsMicrotubule association of TRIM3 revealed by differential extraction proteomics
The microtubule network is formed from polymerised tubulin subunits and associating proteins, which govern microtubule dynamics and a diverse array of functions. To identify novel microtubule binding proteins, we have developed an unbiased biochemical assay which relies on the selective extraction o...
ORGANISM(S): Homo sapiens (Human) 
2024-01-25 | PXD048460 | Pride
Proteomics Taxol Nocodazole Microtubules Trim proteins 
ProteomicsChr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. CCD18 Cell line.
The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study f...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-06-12 | MSV000083961 | MassIVE
ProteomicsChr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. Ramos Cell line.
The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study f...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-06-12 | MSV000083967 | MassIVE
ProteomicsChr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. Jurkat Cell line.
The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study f...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-06-12 | MSV000083966 | MassIVE
ProteomicsChr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. MCF7 Cell line.
The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study f...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-06-12 | MSV000083962 | MassIVE
ProteomicsChr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. MCF7 Cell line.
The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study f...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-06-12 | MSV000083960 | MassIVE
ProteomicsHs_CCD18_ABSciex_TripleTOF_CNB
Chr16-HPP CCD18 Cell line, 5600 triple TOF, CNB
ORGANISM(S): Homo Sapiens (human) 
2014-12-31 | PAe005067 | PeptideAtlas
ProteomicsHs_MCF7_LTQ_ORBI_VELOS_CIB
Chr16-HPP MCF7 Cell line, LTQ Orbi Velos, CIB
ORGANISM(S): Homo Sapiens (human) 
2014-12-31 | PAe005050 | PeptideAtlas
ProteomicsHs_CCD18_LTQ_ORBI_XL
Chr16-HPP CCD18 Cell line, LTQ Orbi XL
ORGANISM(S): Homo Sapiens (human) 
2014-12-31 | PAe005047 | PeptideAtlas
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