Methyl reader - OmicsDI

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Transcriptomics (277)
Unknown (130)
Genomics (65)
Proteomics (51)
Metabolomics (5)
Methylation profiling (2)
Other (1)

Organisms

Homo sapiens (209)
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Saccharomyces cerevisiae (15)
Rattus norvegicus (14)
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Callorhinchus milii (1)
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Lethenteron camtschaticum (1)

Organisms

Homo sapiens (10)
Mus musculus (10)
Arabidopsis thaliana (6)
Solanum lycopersicum (2)
Caenorhabditis elegans (1)
Rattus norvegicus (1)
Plasmodium falciparum (1)
Danio rerio (1)
Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (271)
pride (49)
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geo (36)
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Tissue

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Disease

Breast cancer (2)
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Not applicable (1)
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Pre-eclampsia (1)

Technology Type

Mass Spectrometry (49)
Shotgun proteomics (37)
Bottom-up proteomics (6)
Mass spectrometry (5)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (4)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

ArrayWoRx Biochip Reader [Applied Precision] (4)
Illumina NovaSeq 6000 (4)
NextSeq 500 (3)
Illumina Genome Analyzer IIx (2)
Illumina NovaSeq X (2)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Tandem Gas Chromatography MS - (2)
Illumina TotalPrep RNA Amplification kit (1)
Illumina bead array reader (1)
Mouse Whole Genome-6 v2 Illumina array (1)
Illumina bead array Reader confocal scanner (1)
Illumina HiScan (1)
RNeasy Plus Kit (Qiagen) (1)
NovaSeq PE150 (1)
NextSeq 2000 (1)
Illumina HiSeq 2500 (1)
LTQ Orbitrap Velos (1)
TripleTOF 5600+ (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Tandem Gas Chromatography MS - positive (1)

Publication Date

2013 (48)
2010 (44)
2014 (33)
2011 (31)
2012 (27)
2015 (24)
2016 (22)
2026 (15)
2021 (15)
2020 (15)
2025 (13)
2023 (13)
2022 (12)
2024 (12)
2019 (10)
2018 (10)
2017 (6)
2009 (4)
2008 (4)
2006 (3)
2007 (2)

CHEBI ID

CHEBI:16708 (3)
CHEBI:16977 (3)
CHEBI:17256 (3)
CHEBI:17596 (3)
CHEBI:18050 (3)
CHEBI:46905 (3)
CHEBI:151023 (2)
CHEBI:151027 (2)
CHEBI:151029 (2)
CHEBI:151081 (2)
CHEBI:151084 (2)
CHEBI:151087 (2)
CHEBI:151104 (2)
CHEBI:151108 (2)
CHEBI:151122 (2)
CHEBI:151125 (2)
CHEBI:15318 (2)
CHEBI:15428 (2)
CHEBI:15429 (2)
CHEBI:15603 (2)
CHEBI:15725 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:15940 (2)
CHEBI:15971 (2)
CHEBI:15978 (2)
CHEBI:16000 (2)
CHEBI:16015 (2)
CHEBI:16016 (2)
CHEBI:16027 (2)

Metabolite Name

Acetophenone (2)
Adenosine monophosphate (2)
D-Glucose (2)
Diacetone alcohol (2)
Ethanolamine (2)
Guanine (2)
Guanosine monophosphate (2)
L-Aspartic acid (2)
L-Cysteine (2)
L-Histidine (2)
L-Isoleucine (2)
L-Leucine (2)
L-Lysine (2)
L-Methionine (2)
L-Phenylalanine (2)
L-Proline (2)
L-Serine (2)
L-Threonine (2)
L-Tryptophan (2)
L-Tyrosine (2)
Lumichrome (2)
N-Acetylglutamic acid (2)
Nicotinamide (2)
Ornithine (2)
Palmitic acid (2)
Putrescine (2)
Spermidine (2)
Stearic acid (2)
(3E)-3-Icosene (1)
1,3-Dihydroxyaceton (1MEOX) (2TMS) MP (1)

First Public Date

2020 (7)
2025 (5)
2023 (5)
2026 (4)
2018 (4)
2024 (3)
2022 (3)
2014 (2)
2013 (2)
2019 (1)
2017 (1)
2016 (1)
2015 (1)

Classification

protozoa (1)

Study type

Transcription profiling by array (181)
Methylation profiling by array (40)
RNA-seq of coding RNA (16)
ChIP-seq (11)
Other (4)
ChIP-chip by tiling array (2)
Cell line - One-color microarray (2)
Cell line - High-throughput sequencing (2)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
MeDIP-seq (1)
Human - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
MBD-seq (1)
Comparative genomic hybridization by array (1)
RIP-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2013 (51)
2010 (46)
2014 (35)
2011 (33)
2016 (31)
2015 (28)
2012 (26)
2022 (18)
2018 (18)
2025 (14)
2019 (14)
2023 (13)
2021 (13)
2026 (12)
2017 (12)
2020 (11)
2024 (11)
2008 (5)
2009 (4)
2006 (4)
2007 (2)

Lab affiliation

Professor. Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Wallenberg Center for Protein Research, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark (4)
Professor, Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Wallenberg Center for Protein Research, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark (3)
Proteomics Core Facility, University of Gothenburg (3)
Department of Physiology, Institute of Neuroscience and Physiology, University of Gothenburg, Sweden (2)
Associate Professor Department of Chemistry and Biochemistry 126 Integrated Sciences Building Kent State University (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)
Department of Cell and Molecular Biology, Science for Life Laboratory, Uppsala University, Sweden (1)
Department of Chemistry, Scripps Research (1)
Department of Clinical Microbiology, Sahlgrenska University Hospital, Gothenburg, Sweden (1)
Department of Epigenetics and Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA. (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University Nijmegen, Nijmegen 6525, the Netherlands. (1)
Department of Pathology, Sahlgrenska Center for Cancer Research, Institute of Biomedicine, Sahlgrenska Academy at University of Gothenburg, 405 30 Gothenburg, Sweden (1)
Departments of Medical Radiation Sciences and Oncology Institute of Clinical Sciences Sahlgrenska Center for Cancer Research University of Gothenburg Sweden (1)
Dept of Oral Microbiology and Immunology Institute of Odontology Sahlgrenska Academy University of Gothenburg Sweden (1)
Dept. of Medical Biochemistry and Cell Biology Institute of Biomedicine The Sahlgrenska Academy at the University of Gothenburg SWEDEN (1)
Division of Obstetrics and Gynecology, Department of Clinical Sciences Lund, Lund University, Lund, Sweden (1)
Division of Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology, SE-412 96, Gothenburg, Sweden (1)
Dr. Richard Bartfai ; Department of Molecular Biology ; Faculty of Science ; Radboud University ; Geert Grooteplein 28 ; 6525GA Nijmegen, The Netherlands; Tel.: +31 (0)24-3610561 ; r.bartfai@science.ru.nl (1)
EDyP (1)
Neurodegenerative Diseases Research Group, Korea Brain Research Institute (1)
Professor at Department of Medical Biochemistry and Microbiology; Biochemistry and Cancer;Uppsala University, Sweden (1)
Professor, Department of Chemistry & Molecular Biology, University of Gothenburg, Box 462, 40530 Göteborg, Sweden (1)
Professor, Department of Physiology and Pharmacology, Karolinska Institutet, Stockholm, Sweden (1)
Professor,Department of Infectious Diseases, University of Gothenburg; Box 480, 40530 Göteborg, Sweden (1)
Professor. Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Wallenberg Center for Protein Research, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark (1)
Proteomics Core Facility University of Gothenburg (1)
Proteomics Core Facility University of Gothenburg Sweden (1)
Proteomics Core Facility at Sahlgrenska Academy, University of Gothenburg (1)
Proteomics Core Facility, Sahlgrenska Academy, University of Gothenburg, Sweden (1)
Proteomics Core Facility, Sahlgrenska Academy, University of Gothenburg (1)

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Hijacking Methyl Reader Proteins for Nuclear-Specific Protein Degradation.

Not available

S-EPMC10331457 | biostudies-literature

Dual Histone Methyl Reader ZCWPW1 Facilitates Repair of PRDM9-Induced Meiotic Double Strand Breaks

PRJNA579158 | ENA

Chemical probes for methyl lysine reader domains.

Not available

S-EPMC5018434 | biostudies-literature

Nucleosome context regulates chromatin reader preference

PRJNA1048076 | ENA

Structural basis of YTH domain as m6A reader

The N6-methyladenosine (m6A) is the most abundant internal modification in almost all eukaryotic messenger RNAs, and is dynamically regulated. Therefore, identification of m6A readers is especially important in determining the cellular function of m6A. YTHDF2 has recently been characterized as the f...

ORGANISM(S): Homo sapiens

2014-09-18 | E-GEOD-58352 | biostudies-arrayexpress

A General TR-FRET Assay Platform for High-Throughput Screening and Characterizing Inhibitors of Methyl-Lysine Reader Proteins.

Not available

S-EPMC6586500 | biostudies-literature

Plasmodium falciparum bromo-domain containing epigenetic protein complexes recruited to modified histone tails as identified by histone peptide pulldown (HPP)-MS/MS and further characterized by GFP-IP-MS/MS and HA-IP-MS/MS

In order to identify epigenetic protein complexes recruited to histone PTMs in the deadly human malaria parasite Plasmodium falciparum, we set out to perform histone peptide pulldowns with various histone peptides. Biotinylated peptides corresponding to P. falciparum histone variant H2A.Z, H2B.Z and...

ORGANISM(S): Plasmodium falciparum

2019-10-15 | PXD010644 | Pride

Nucleosome context regulates chromatin reader preference

Chromatin is more than a simple genome packaging system, and locally distinguished by histone post-translational modifications (PTMs) that can change nucleosome structure and / or be “read” by chromatin-associated proteins to mediate downstream events. An accurate understanding of histone PTM bindin...

ORGANISM(S): Homo sapiens

2025-09-25 | GSE249239 | GEO

Fragment-Based NMR Screening of the BPTF PHD Finger Methyl Lysine Reader Leads to the First Small-Molecule Inhibitors.

Not available

S-EPMC10577693 | biostudies-literature

Structural basis of YTH domain as m6A reader

ORGANISM(S): Homo sapiens

2014-09-18 | GSE58352 | GEO

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