Microbial cell factories

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Organisms

Saccharomyces cerevisiae (6)
Saccharomyces cerevisiae CEN.PK113-7D (2)
Streptomyces coelicolor A3(2) (2)
Escherichia coli (2)
Escherichia coli W (1)
Aspergillus nidulans (1)
Corynebacterium glutamicum (1)
Rhodotorula toruloides (1)
Petasospora fabianii (1)
Yarrowia lipolytica (1)

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pride (11)
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Technology Type

Mass Spectrometry (11)
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SWATH MS (1)

Instrument Platform

RiboZero (2)
Trizol (Invitrogen); FastPrep (MP Biochemicals) (2)
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Illumina NovaSeq 6000 (2)
Agilent 7890A GC with 5975C inert XL MSD (2)
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Liquid Chromatography MS - negative - reverse phase (1)

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2017 (1)
2018 (1)

CHEBI ID

CHEBI:15756 (4)
CHEBI:16977 (3)
CHEBI:28842 (3)
CHEBI:17754 (3)
CHEBI:15963 (3)
CHEBI:16857 (3)
CHEBI:32816 (3)
CHEBI:42111 (2)
CHEBI:28822 (2)
CHEBI:28718 (2)
CHEBI:35619 (2)
CHEBI:30805 (2)
CHEBI:33508 (2)
CHEBI:18257 (2)
CHEBI:16695 (2)
CHEBI:16988 (2)
CHEBI:15428 (2)
CHEBI:17148 (2)
CHEBI:16000 (2)
CHEBI:17268 (2)
CHEBI:16865 (2)
CHEBI:16467 (2)
CHEBI:17203 (2)
CHEBI:15971 (2)
CHEBI:16704 (2)
CHEBI:16015 (2)
CHEBI:18012 (2)
CHEBI:30797 (2)
CHEBI:16414 (2)
CHEBI:15603 (2)

Metabolite Name

L-Threonine (3)
Stearic acid (3)
Palmitic acid (3)
Ethanolamine (2)
Ribitol (2)
L-Allothreonine (2)
D-Glucose (2)
Glycerol (2)
L-Alanine (2)
L-Proline (2)
Putrescine (2)
Ornithine (2)
L-Tryptophan (2)
L-Glutamate (2)
Dodecanoic acid (2)
Arachidic acid (2)
L-Valine (2)
L-Leucine (2)
Uridine 5'-monophosphate 2 (1)
Uridine 2 (1)
Unknown 926 (1)
Unknown 919 (1)
Unknown 911 (1)
Unknown 901 (1)
Unknown 889 (1)
Unknown 8833 (1)
Unknown 865 (1)
Unknown 863 (1)
Unknown 8620 (1)
Unknown 8598 (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

First Public Date

2026 (6)
2025 (6)
2021 (5)
2020 (3)
2019 (3)
2023 (2)
2022 (2)
2014 (2)
2018 (1)
2016 (1)

Classification

bacteria (4)
fungi (1)

Modelling Approach

Constraint-based model (2)

Study type

RNA-seq of coding RNA (4)
Other (1)
Transcription profiling by array (1)

Release Date

2024 (289)
2022 (284)
2023 (254)
2021 (225)
2025 (213)
2020 (207)
2019 (194)
2018 (165)
2017 (111)
2016 (90)
2015 (85)
2014 (70)
2012 (62)
2011 (54)
2013 (48)
2010 (37)
2026 (33)
2009 (23)
2006 (12)
2007 (11)
2008 (7)
2005 (5)
2004 (4)

Lab affiliation

Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Germany (1)
Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark and Systems and Synthetic Biology Division, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden (1)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; The Medical Research Council Toxicology Unit, University of Cambridge, Cambridge, UK (1)
Technical University of Munich (TUM); TUM School of Life Sciences, Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS); Gregor-Mendel-Strasse 4 85354 Freising GERMANY (1)
The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Avenue, Wuxi 214122, Jiangsu, China (1)
Tsinghua University (1)
University of Greifswald Center of Functional Genomics of Microbes Institute of Microbiology Department of Microbial Proteomics Felix-Hausdorff-Str.8 17489 Greifswald Germany (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (1)
University of Tartu, Estonia (1)
ValgepeaLab, Institute of Bioengineering, University of Tartu (1)

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Global protein dephosphorylation patterns alter the performances of microbial cell factories

Global regulation of protein phosphorylation and dephosphorylation plays crucial roles in various cellular processes, serving as a fundamental mechanism for regulating protein function, cell metabolic performance and stress response. In response to differences in nutrition, alterations in the metabo...

ORGANISM(S): Saccharomyces cerevisiae Saccharomyces cerevisiae (Baker's yeast)

2024-10-23 | PXD056937 | Pride