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ProteomicsMapping the Triticum aestivum proteome
Wheat is the staple food of over 35% of the world’s population, accounts for 20% of all human calories, and its yield and quality improvement is a focus in the effort to meet new demands from population growth and changing diets. As the complexity of the wheat genome is unravelled, determining how i...
ORGANISM(S): Triticum aestivum (Wheat) 
2016-11-17 | PXD004720 | Pride
Proteomics Lcms Proteome Database Triticum aestivum Spectral counting Wheat organs Mapping Wheat 
ProteomicsBONCAT in Arabidopsis cell culture LC-MS
Determining which proteins are actively synthesised at a given point in time and being able to extract them for analysis is important to understanding plant responses to environmental or developmental stimuli, but there are few verified experimental tools to do this directly or quantitatively. In-vi...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2021-06-23 | PXD023170 | Pride
Boncat Arabidopsis Lc-ms Cell culture Noncanoical amino acids 
ProteomicsRibosomal protein turnover under normal condition
The cytosolic ribosome is composed of a large number of distinct protein types and its overall function is responsible for the synthesis of most proteins in plants. Defining the role of each of its protein subunits is a major challenge which is hampered by a lack of consistency in current attributi...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2020-08-17 | PXD012839 | Pride
Arabidopsis cell culture 15n isotopic labelling Protein turnover 80s cytosolic ibosome isolation 
ProteomicsENOD93 interacts with cytochrome c oxidase altering respiratory ATP production and root growth in plants – blue native gel protein complex identification
The early nodulin 93 (ENOD93) gene family in plants can regulate biological nitrogen fixation in legumes and nitrogen use efficiency in cereals but its molecular function is unknown. We show profile hidden Markov models define ENOD93 as a distant homolog of the N-terminal domain of RESPIRATORY SUPER...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2025-05-06 | PXD041903 | Pride
Early nodulin 93  mitochondrial oxidative phosphorylation  rcf2  complex iv  atp synthesis 
ProteomicsENOD93 interacts with cytochrome c oxidase altering respiratory ATP production and root growth in plants – targeted analysis of peptides for mitochondrial proteins
The early nodulin 93 (ENOD93) gene family in plants can regulate biological nitrogen fixation in legumes and nitrogen use efficiency in cereals but its molecular function is unknown. We show profile hidden Markov models define ENOD93 as a distant homolog of the N-terminal domain of RESPIRATORY SUPER...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2025-05-06 | PXD041995 | Pride
Early nodulin 93  mitochondrial oxidative phosphorylation  rcf2  complex iv  atp synthesis 
ProteomicsRubisco acetylation stoichiometry in Arabidopsis Thaliana
Multiple studies have shown Rubisco to be subject to Lys-acetylation at various residues; however, conflicting reports exist about the biological significance of these post-translational modifications. One aspect of the Lys-acetylation that has not been addressed in plants generally, or with Rubisco...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2020-09-28 | PXD019268 | Pride
Lys-acetylation Arabidopsis Rubisco 
ProteomicsTo invesigate the role of autophagy in Arabidopsis root cellular protein turnover and proteostasis (15N Spike-in root)
Protein turnover analysis using partial 15N labelling and protein abundance analysis using 15N spike-in were coupled to investiage the role of autophagy in protein degradation and proteostasis. Our findings show that dysfuncional autophagy due to loss-of-function autophagy components ATG5 and 11 lea...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-07-12 | PXD010992 | Pride
Arabidopsis 15n labelling Protein turnover Autophagy 
ProteomicsArabidopsis, protein turnover, plastid, leaf growth and development-15N progressive labelling
In order to characterize plant protein degradation rates and understand their determinants as they relate to plant growth rate, we have applied 15N labelling approaches in leaves of the Arabidopsis rosette. We found a series of leaves in Arabidopsis plants for which the proteome was stable over time...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2017-02-01 | PXD004550 | Pride
Arabidopsis Development Plastid Protein turnover Leaf growth 
ProteomicsArabidopsis, protein turnover, plastid, leaf growth and development-15N fully labelling as reference
In order to characterize plant protein degradation rates and understand their determinants as they relate to plant growth rate, we have applied 15N labelling approaches in leaves of the Arabidopsis rosette. We found a series of leaves in Arabidopsis plants for which the proteome was stable over time...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2017-02-01 | PXD004549 | Pride
Arabidopsis Development Plastid Protein turnover Leaf growth 
ProteomicsTo invesigate the role of autophagy in Arabidopsis shoot cellular protein turnover and proteostasis, part 2
Protein turnover analysis using partial 15N labelling and protein abundance analysis using 15N spike-in were coupled to investiage the role of autophagy in protein degradation and proteostasis. Our findings show that dysfuncional autophagy due to loss-of-function autophagy components ATG5 and 11 lea...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-07-12 | PXD010932 | Pride
Arabidopsis 15n labelling Protein turnover Autophagy 
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