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MetabolomicsFIRST-seq: a nanopore-based cDNA sequencing platform for RNA modification and structure profiling

This repository contains the LC-MS/MS raw data for the RNA quantifications obtained from in vivo DMS probed RNAs from E.coli and MDA-MB231 cell lines.

2026-04-26 | MTBLS14382 | MetaboLights
MetabolomicsWhole genome sequencing and targeted metabolomics of multidrug-resistant Klebsiella pneumoniae KP21-10C
This study investigates multidrug-resistant Klebsiella pneumoniae KP21-10C using whole genome sequencing and targeted energy metabolomics. Genomic sequencing data were generated to characterize the bacterial genome, and targeted LC-MS/MS metabolomics was performed to quantify energy metabolism-relat...
2026-06-25 | MTBLS14858 | MetaboLights
MetabolomicsNutritional quality and genetic differences of five amaranth cultivars revealed by metabolome profiling and whole-genome sequencing (Seed assays)

BACKGROUND: Amaranth (Amaranthus spp.) has high nutritional quality, with edible grain and leaves, and many agronomic advantages, making it a promising part of the solution for global food insecurity. However, we lack comprehensive metabolomic and genome sequence data fo...

2025-02-25 | MTBLS815 | MetaboLights
MetabolomicsNutritional quality and genetic differences of five amaranth cultivars revealed by metabolome profiling and whole-genome sequencing (Leaf assays)

BACKGROUND: Amaranth (Amaranthus spp.) has high nutritional quality, with edible grain and leaves, and many agronomic advantages, making it a promising part of the solution for global food insecurity. However, we lack comprehensive metabolomic and genome sequence data fo...

2025-02-25 | MTBLS3498 | MetaboLights
UnknownTwo-year cross-sectional studies reveal that single, young MSMs in Shenzhen, China are at high risk for HIV infection.
Not available
S-EPMC6589171 | biostudies-literature
ProteomicsCombination of proteogenomics with peptide de novo sequencing identifies new genes and hidden posttranscriptional modifications
Proteogenomics, the combination of proteomics, genomics and transcriptomics, has considerably improved genome annotation in under-studied phylogenetic groups, where homology information is missing. Yet, it can also be advantageous when re-investigating well-annotated genomes. Here, we apply an advan...
ORGANISM(S): Sordaria macrospora 
2019-09-25 | PXD014240 | Pride
Lc-msms De novo peptide sequencing Rna editing Sordaria macrospora Proteogenomics 
ProteomicsPaenibacillus sp. GKG secreted proteins LC-MSMS
The advances of next-generation sequencing technologies enabled the continuous growth in the number of gene sequences deposited into the CAZy database, meanwhile, the number of biochemically characterized CAZymes is growing at a much slower rate. The biochemical characterization of discovered enzyme...
ORGANISM(S): unclassified Paenibacillus 
2022-10-20 | PXD036565 | Pride
Lc-msms Paenibacillus Secreted proteins Ghs 
ProteomicsLC-MSMS analyses of purified, recombinant TcJHR complexes
Juvenile hormone (JH) serves vital roles in insect reproduction, development, and many aspects of physiology. JH primarily acts at the gene-regulatory level through an intracellular receptor. The JH receptor (JHR) is a ligand-activated complex of transcription factors of the bHLH-PAS family, consist...
ORGANISM(S): Tribolium castaneum (Red flour beetle) 
2022-02-16 | PXD028394 | Pride
Lc-msms Juvenile hormone receptor Tribolium castaneum 
ProteomicsIdentification of SFXN1 partners LC-MSMS
Sideroflexins (SFXN) are evolutionarily conserved mitochondrial carriers belonging to the SCL56 family. Because little is known about SFXN1 interactome, a high-throughput search of SFXN1 binding partners was launched with the aim to better understand its mitochondrial functions. The large-scale iden...
ORGANISM(S): Homo sapiens (Human) 
2022-10-14 | PXD030749 | Pride
Mitochondria Mcf-7 Coip/lc-msms 
ProteomicsChaetomium thermophilum Naa50 and Naa15 TMT-labeled LC-MSMS
TMT-labeled LC-MSMS was performed to identify and quantify proteins from three different TAP-purification pull-outs from Chaetomium thermophilum. The aim was to identify interaction partners and to study, whether the two tagged proteins (Naa50 and Naa15) are likely to interact, as they do in other o...
ORGANISM(S): Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) 
2022-10-14 | PXD035320 | Pride
Naa50 naa15 lc-msms tmt chaetomium thermophilum 
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