Multi-laboratory

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Transcriptomics (3648)
Unknown (2962)
Genomics (545)
Metabolomics (207)
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Organisms

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mouse gut metagenome (5)
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Allochromatium vinosum DSM 180 (3)
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Oryzias latipes (3)
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Organisms

Homo sapiens (31)
Mus musculus (23)
Escherichia coli str. K-12 substr. MG1655 (3)
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Musca domestica (2)
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human metagenome (2)
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Gambierdiscus sp. D Anderson laboratory (1)
Flamella sp. ATCC 50557 (1)
Euglena mutabilis (1)
Cryptomonas paramaecium (1)
Chilodonella uncinata (1)
Bodo saltans (1)
Arachnula sp. (1)
Pardosa pseudoannulata (1)
Monomorium pharaonis (1)

Repository

biostudies-arrayexpress (3912)
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geo (45)
pride (41)
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Tissue

Cell culture (7)
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Disease

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Subarachnoid hemorrhage NOS (1)
Cardiac defects (1)
CAMN (1)
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Infected (1)

Technology Type

Mass spectrometry (117)
Mass spectrometry assay (84)
Mass Spectrometry (41)
Shotgun proteomics (17)
Bottom-up proteomics (7)
NMR spectroscopy (6)
SWATH MS (4)
Data-dependent acquisition (4)
Top-down proteomics (4)
Data-independent acquisition (3)
Illumina HiSeq 2000, ILLUMINA (2)
NMR spectroscopy assay (2)
SRM/MRM (2)
Gel-based experiment (2)
Infinium_OmniExpress-24v1.0 (1)
Illumina HiSeq 2000, NextSeq 500, ILLUMINA (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
RNA mass spectrometry (1)
MSE (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (77)
Illumina HiSeq 4000 (56)
Illumina NovaSeq 6000 (47)
Illumina HiSeq 2000 (45)
NextSeq 500 (19)
Illumina MiSeq (11)
Illumina Genome Analyzer IIx (10)
Illumina Genome Analyzer II (10)
Illumina HiSeq 1500 (10)
Axon GenePix 4000B scanning hardware (9)
NextSeq 2000 (6)
NextSeq 550 (5)
Affymetrix GeneChip Scanner 3000 7G (4)
GenePix 4000A [Axon Instruments] (4)
Scanning hardware (4)
Illumina HiSeq 1000 (4)
Illumina HiSeq 3000 (4)
GenePix Professional 4200A [Axon Instruments] (3)
ScanArray Express HT [PerkinElmer] (3)
Agilent High resolution C scanner (2)
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Agilent G2565BA (2)
BAS-5000 [FUJIFILM] (2)
G2505A DNA microarray scanner [Agilent] (2)
Axon- GenePix4000B (2)
418 [Affymetrix] (2)
G2565BA DNA microarray scanner [Agilent] (2)
GenePix 4000B [Axon Instruments] (2)
HiSeq X Ten (2)
NanoString nCounter (1)

Publication Date

2013 (633)
2011 (444)
2015 (431)
2014 (407)
2010 (390)
2012 (342)
2008 (250)
2016 (219)
2009 (192)
2007 (117)
2026 (107)
2022 (96)
2005 (86)
2025 (79)
2021 (79)
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2023 (71)
2018 (70)
2020 (69)
2017 (62)
2006 (49)
2019 (48)
2004 (16)
2003 (6)

UNIPROT ID/AC

9544.ENSMMUP00000028270 (15)
A0A1D5QWS0_MACMU (15)
9544.ENSMMUP00000034943 (15)
TPIS_MACMU (15)
I0FUX3_MACMU (15)
F7ACB4_MACMU (15)
9544.ENSMMUP00000041218 (15)
F7HRN7_MACMU (15)
F7HT55_MACMU (15)
H9Z5Y2_MACMU (15)
9544.ENSMMUP00000000740 (15)
9544.ENSMMUP00000018047 (15)
H9FPI0_MACMU (15)
F7HSC9_MACMU (15)
9544.ENSMMUP00000028220 (15)
F6SPY0_MACMU (15)
A0A1D5Q3Q0_MACMU (15)
F7EDG2_MACMU (15)
I0FSL5_MACMU (15)
9544.ENSMMUP00000010110 (15)
H9Z0R8_MACMU (15)
A0A1D5QFJ9_MACMU (15)
F6PUU7_MACMU (15)
9544.ENSMMUP00000009144 (15)
9544.ENSMMUP00000012790 (15)
F7FLQ1_MACMU (15)
F6VBK4_MACMU (15)
A0A5F8AKG3_MACMU (15)
F7E2S4_MACMU (15)
A0A1D5QLT3_MACMU (15)

CHEBI ID

CHEBI:17152 (4)
CHEBI:68444 (4)
CHEBI:2198 (4)
CHEBI:80762 (4)
CHEBI:30614 (4)
CHEBI:1790926833 (4)
CHEBI:32188 (4)
CHEBI:80602 (4)
CHEBI:27928 (4)
CHEBI:80554 (4)
CHEBI:23057 (4)
CHEBI:27768 (4)
CHEBI:26863 (4)
CHEBI:59411 (4)
CHEBI:80604 (4)
CHEBI:7857782584 (4)
CHEBI:34131 (4)
CHEBI:27827 (4)
CHEBI:72331 (4)
CHEBI:7858682585 (4)
CHEBI:2295 (4)
CHEBI:34137 (4)
CHEBI:80657 (4)
CHEBI:82590 (4)
CHEBI:25858 (4)
CHEBI:82558 (4)
CHEBI:86022 (4)
CHEBI:80555 (4)
CHEBI:80558 (4)
CHEBI:34563 (4)

Metabolite Name

Creatine (56)
Taurine (55)
Uridine (55)
Hypoxanthine (52)
Adenosine (50)
Choline (49)
Inosine (49)
Creatinine (45)
Guanosine (45)
Betaine (44)
Adenine (43)
Cytidine (42)
Cytosine (40)
Histamine (38)
Ornithine (38)
Riboflavin (37)
Uracil (37)
Guanine (37)
Xanthine (37)
L-Phenylalanine (36)
Indole (35)
Xanthosine (35)
Oleamide (35)
Azelaic acid (35)
Phenylacetylglycine (34)
Allantoin (33)
L-Tyrosine (33)
Citrulline (32)
Thymidine (32)
Thymine (31)

First Public Date

2024 (52)
2026 (36)
2025 (25)
2023 (23)
2021 (15)
2019 (13)
2022 (12)
2014 (12)
2020 (10)
2018 (9)
2016 (6)
2017 (4)
2015 (3)
2013 (3)
2012 (1)

Modelling Approach

Constraint-based model (5)

Study status

Completed (1)

Lab affiliation

Institute of Neuroscience, College of Medicine, Xiamen University, Xiamen, Fujian 361005, China (2)
University of Greifswald, Institute for Microbiology, Department for Microbial Proteomics (2)
Australian Institute for Bioengineering and Nanotechnology, The University of Queensland (2)
Systems Biology Ireland, University College Dublin (2)
ProteoRed-ISCIII, Proteomics Platform, Barcelona Science Park, Barcelona, Spain. (1)
Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; The Medical Research Council Toxicology Unit, University of Cambridge, Cambridge, UK (1)
MCG Woods Hole Oceanographic Institution, USA (1)
Director | Proteome Exploration Laboratory | Beckman Institute California Institute of Technology Division of Biology and Biological Engineering (1)
Biozentrum der LMU München Pflanzenwissenschaften Großhaderner Str. 2-4 82152 Planegg-Martinsried (1)
1. Africa Health Research Institute, Durban, South Africa 2. 3Department of Microbiology, University of Alabama at Birmingham, Birmingham, AL, USA 3. Center for AIDS Research and Center for Free Radical Biology, University of Alabama at Birmingham, Birmingham, AL, USA (1)
Fujian Provincial Key Laboratory of Neurodegenerative Disease and Aging Research, Institute of Neuroscience,School of Medicine, Xiamen University, Xiangan South Road, Xiamen, Fujian, 361102 P. R. China (1)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, India (1)
University of Greifswald, Institute for Microbiology, Department for Microbial Proteomics (1)
Pathology, Fundación Jiménez Díaz University Hospital Health Research Institute (IIS—FJD, UAM), Madrid 28040, Spain (1)
Max Planck for Multidisciplinary Sciences Bioanalytical Mass Spectrometry Am Fassberg 11 37077 Gottingen (1)
Sequence database group (1)
Institute of Clinical Chemistry/Central Laboratories, Mass Spectrometric Proteomics, University Clinic Hamburg-Eppendorf (1)
Section eScience (S.3), Federal Institute for Materials Research and Testing, Berlin, Germany Bioinformatics Unit (MF1), Department for Methods Development and Research Infrastructure, Robert Koch Institute, Berlin, Germany (1)
Department of Biomedical Sciences, University of Sassari, Italy (1)
Department of Biology, Plant ecophysiology lab, ADepartment of Biological Sciences, University of Cape Town, Private Bag X3, Rondebosch 7701, South Africa (1)
State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China (1)
"Institute of Biomedical and Pharmaceutical Sciences, Guangdong University of Technology, Guangzhou 510006, China" (1)
Department of Pharmacology, School of Medicine, Tulane University, New Orleans, LA (1)
Underwood-Prescott Professor, Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, 56-731 Cambridge, MA 02139-4307 (1)
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China (1)
Department of Evolutionary Biology, Ecology and Environmental Sciences, Plant Physiology Section, University of Barcelone, 08028 Barcelone, Spain. (1)
Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution (1)
School of Life Sciences and Proteomics and Metabolomics Core Facility, Faculty of Science, University of Technology Sydney, Ultimo, NSW 2007, Australia (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, CH-8093 Zurich, Switzerland. Faculty of Science, University of Zurich, CH-8057 Zurich, Switzerland (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland. (1)

IsPrivate

False (8)

Model Flag

Non Kinetic (1)

Submitter Keywords

Not Peer Reviewed (5)
FROG (4)

Classification

bacteria (8)
protozoa (4)
viruses (2)
fungi (1)

Modification

Not available (1)

Study type

Transcription profiling by array (2503)
RNA-seq of coding RNA (364)
ChIP-chip by tiling array (355)
ChIP-seq (223)
Unknown experiment type (54)
Comparative genomic hybridization by array (51)
RNA-seq of non coding RNA (51)
Methylation profiling by high throughput sequencing (45)
RNA-seq of coding RNA from single cells (42)
Animal - High-throughput sequencing (25)
Methylation profiling by array (24)
Other (22)
Animal - One-color microarray (15)
DNA-seq (14)
Transcription profiling by RT-PCR (12)
MicroRNA profiling by array (12)
ChIP-chip by array (11)
Transcription profiling by tiling array (8)
RNA-seq of total RNA (8)
Transcription profiling by SAGE (7)
Bisulfite-seq (6)
High-throughput sequencing (5)
MicroRNA profiling by high throughput sequencing (5)
Proteomic profiling by array (5)
Cell line - One-color microarray (4)
Cell line - High-throughput sequencing (4)
ATAC-seq (3)
Single nucleus RNA sequencing (3)
Animal - Single-cell sequencing (2)
Human - One-color microarray (2)

Release Date

2013 (679)
2025 (568)
2015 (482)
2011 (462)
2014 (453)
2023 (411)
2010 (405)
2024 (390)
2021 (371)
2012 (364)
2022 (359)
2016 (283)
2020 (272)
2008 (258)
2009 (200)
2018 (185)
2019 (184)
2017 (166)
2007 (123)
2026 (95)
2005 (87)
2006 (52)
2004 (19)
2003 (6)

Location

Australia (1)

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Multi-laboratory analysis of sample stability for proteomics following non-cooled international transport

As international collaborative research grows there is increasing desire to transport specimens around the globe. Transporting biological samples such as cells or tissues is complicated by the need to maintain integrity and minimise modification and degradation, but this is economically costly as th...

ORGANISM(S): Homo sapiens (Human)

2018-03-02 | PXD008160 | Pride

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

Quantitative proteomics employing mass spectrometry has become an indispensable tool in basic and applied life science research. Methods based on data-dependent acquisition have proved extremely valuable for qualitative proteome analysis but historically have struggled to achieve reproducible quanti...

ORGANISM(S): Homo sapiens (Human)

2020-02-19 | PXD004886 | Pride

Reproducibility Proteomics Swath-ms

Results from a Multi-Laboratory Ocean Metaproteomic Intercomparison: Effects of LC-MS Acquisition and Data Analysis Procedures

Metaproteomics is an increasingly popular methodology that provides information regarding the metabolic functions of specific microbial taxa and can be used to assess environmental stressors and change and has potential for contributing to ocean ecology and biogeochemical studies. To enable future l...

ORGANISM(S): environmental samples <bacteria Bacteria

2024-05-30 | PXD043218 | Pride

Marine Metaproteomics Proteomics Lc-ms Intercomparison Ocean Lcms

Cross-platform comparability of microarray data

To facilitate collaborative research efforts between multi-investigator teams using DNA microarrays, we identified sources of error and data variability between laboratories and across microarray platforms and methods to accommodate this variability. RNA expression data were generated in seven labo...

ORGANISM(S): Mus musculus

2010-06-10 | E-GEOD-2458 | biostudies-arrayexpress

A Multi-Laboratory, Multi-Platform Analysis of the Multi-Attribute Method.

Not available

S-EPMC12655225 | biostudies-literature

A multi-part matching strategy for mapping LOINC with laboratory terminologies.

Not available

S-EPMC4147612 | biostudies-literature

Informatics Component: Results from a Multi-Laboratory Ocean Metaproteomic Intercomparison: Effects of LC-MS Acquisition and Data Analysis Procedures

ORGANISM(S): Bacteria Bacteria

2024-05-30 | PXD044234 | Pride

Environmental Ocean Intercomparison Metaproteomics