Mycobacterium marinum

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Mycobacterium marinum (15)
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Mycobacterium marinum E11 (1)
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Dictyostelium discoideum AX4 (1)
Dictyostelium discoideum (1)
Mycolicibacterium smegmatis (1)
Homo sapiens (1)
Mycobacterium marinum ATCC BAA-535 (1)
Mycobacteriales (1)

Organisms

Danio rerio (45)
Mycobacterium marinum (26)
Mus musculus (4)
Mycobacterium marinum M (3)
Mycobacterium marinum ATCC BAA-535 (2)
Mycobacterium marinum E11 (2)
mouse gut metagenome (2)
Mycobacterium marinum DL240490 (1)
Mycobacterium marinum str. Europe (1)
Acipenser schrenckii (1)
Mycobacterium marinum MB2 (1)
Mycobacterium pseudoshottsii (1)
Mycolicibacterium cyprinidarum (1)
Mycobacterium (1)
Mycobacterium tuberculosis H37Rv (1)
unidentified (1)
Carassius auratus (1)
Dictyostelium discoideum (1)
soil metagenome (1)

Repository

ENA (139)
geo (68)
biostudies-arrayexpress (21)
pride (12)
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Tissue

Cell culture (1)
Culture fluid (1)
Monocyte (1)

Disease

Tuberculosis (4)
Fish tuberculosis (1)
Primary tuberculosis (1)

Technology Type

Mass Spectrometry (12)
Shotgun proteomics (8)
Bottom-up proteomics (2)
Data-dependent acquisition (2)
Mass spectrometry (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)

Instrument Platform

Q Exactive (4)
Impact II (2)
LTQ Orbitrap Velos (2)
TimsTOF Pro 2 (2)
Illumina NovaSeq X (1)
Q Exactive HF (1)
TimsTOF Pro (1)
Agilent 6520 QTOF (1)

Publication Date

2023 (15)
2014 (12)
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2024 (8)
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2018 (8)
2019 (7)
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2013 (6)
2016 (5)
2022 (5)
2017 (5)
2010 (4)
2012 (3)
2009 (3)
2008 (3)
2020 (3)
2015 (2)
2007 (1)
2005 (1)

CHEBI ID

CHEBI:137423 (1)
CHEBI:137422 (1)
CHEBI:137421 (1)
CHEBI:137420 (1)
CHEBI:137418 (1)
CHEBI:137417 (1)
CHEBI:137416 (1)
CHEBI:137414 (1)
CHEBI:137413 (1)

Metabolite Name

(E,Z)-N~2~,N~6~-bis[(3R)-1-hydroxy-3-isocyanododecylidene]-L-lysine (1)
(E,Z)-N~2~,N~6~-bis[(3R)-1-hydroxy-3-isocyanodecylidene]-L-lysine (1)
(3R)-3-[(carboxymethyl)amino]decanoic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxydecylidene)amino]hexyl}decanimidic acid (1)
(1Z,3R)-N-[(5S)-6-hydroxy-5-{(E)-[(3R)-1-hydroxy-3-isocyanobutylidene]amino}hexyl]-3-isocyanobutanimidic acid (1)
(1Z,3R)-N-[(5S)-6-(acetyloxy)-5-{(E)-[(3R)-1-hydroxy-3-isocyanobutylidene]amino}hexyl]-3-isocyanobutanimidic acid (1)
(3R)-3-[(carboxymethyl)amino]butanoic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxyhexylidene)amino]hexyl}hexanimidic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxybutylidene)amino]hexyl}butanimidic acid (1)

First Public Date

2023 (21)
2026 (18)
2014 (15)
2025 (12)
2021 (12)
2019 (11)
2013 (11)
2024 (9)
2018 (7)
2017 (5)
2016 (5)
2015 (5)
2022 (4)
2020 (4)

Classification

bacteria (39)
protozoa (1)

Study type

Transcription profiling by array (13)
RNA-seq of coding RNA (8)

Release Date

2025 (38)
2023 (33)
2019 (31)
2024 (28)
2021 (27)
2020 (26)
2018 (26)
2016 (21)
2022 (21)
2017 (21)
2014 (18)
2013 (18)
2015 (18)
2012 (12)
2009 (10)
2011 (10)
2026 (7)
2010 (6)
2008 (6)
2005 (5)
2007 (4)
2003 (4)
2004 (3)
2002 (3)
1998 (3)
2006 (2)
2001 (2)
2000 (2)

Lab affiliation

OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (2)
1. Tuberculosis Research Program Centenary Institute, The University of Sydney, Camperdown, NSW 2050, Australia 2. The University of Sydney, Discipline of Infectious Diseases & Immunology and Sydney Institute for Infectious Diseases, Camperdown, NSW 2050, Australia (1)
Aix-Marseille Univ, Inserm, CNRS, Institut Paoli-Calmettes, CRCM, Marseille Protéomique (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Connie Jimenez, OncoProteomics Laboratory, Dept of Medical Oncology, Amsterdam University Medical Centers, Amsterdam, The Netherlands (1)
Faculty of Medicine and Health Technology, FI-33014, Tampere University, Finland (1)
Head of Proteomics (1)
Lipolysis and bacterial Pathogenicity Team LISM UMR7255 CNRS 31, chemin Joseph Aiguier - CS 70071 F-13402 marseille cedex 09 (1)
OncoProteomics Laboratory, Dept of Medical Oncology, Amsterdam University Medical Center, Amsterdam, The Netherlands (1)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore 575018, India (1)
Professor, School of Life Sciences, The Chinese University of Hong Kong Director, Centre for Protein Science and Crystallography Assistant Dean (Student Affairs), Faculty of Sciences Fellow, Shaw College (1)

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Proteomics analysis of mycobacterium marinum culture filtrate

Mycobacterium marinum is a pathogenic bacterium that causes infections in both fish and humans. The PE/PPE protein family is unique to mycobacteria and has been implicated in various aspects of mycobacterial pathogenicity. Understanding the presence and potential function of these proteins in M. mar...

ORGANISM(S): Mycobacterium marinum (strain ATCC BAA-535 / M)

2025-05-13 | PXD050612 | Pride

Transcription profiling of zebrafish at the late stage of chronic tuberculosis due to Mycobacterium marinum infection

Transcriptome profiling of adult zebrafish at the late stage of chronic tuberculosis due to Mycobacterium marinum infection.

ORGANISM(S): Danio rerio

2005-08-17 | E-MEXP-405 | biostudies-arrayexpress

Comparative transcriptomics of Mycobacterium bovis and Mycobacterium marinum

Related surrogate species are often used to study the molecular basis of pathogenicity of a pathogen on the basis of a shared set of biological features generally attributable to a shared core genome consisting of orthologous genes. An important and understudied aspect, however, is the extent to whi...

ORGANISM(S): Mycobacterium bovis

2014-09-08 | E-GEOD-51881 | biostudies-arrayexpress

Mycobacterium marinum

Mycobacterium marinum Genome sequencing and assembly

PRJNA276085 | ENA

Mycobacterium marinum

Whole genome sequencing of Mycobacterium marinum

PRJDB12467 | ENA

Mycobacterium marinum

Whole genome sequencing of Mycobacterium marinum, an opportunistic pathogen

PRJDB2732 | ENA

Mycobacterium marinum MB2

Mycobacterium marinum MB2 Genome sequencing and assembly

PRJNA174278 | ENA

Mycobacterium marinum

Mycobacterium marinum Raw sequence reads

PRJNA561296 | ENA

Mycobacterium marinum strain:ATCC 927

Mycobacterium marinum strain:ATCC 927 Genome sequencing

PRJNA955429 | ENA

Novel compounds modulating Mycobacterium marinum ESX-5 secretion display anti-mycobacterial activity in vivo

We observed through Western blot that Mycobacterium marinum secreted more highly abundant PE-PGRS proteins that are above 130 kDa when treated with compound 36 than mock-treated bacteria. We would like to explore which PE-PGRS proteins are more secreted in this condition and whether other proteins a...

ORGANISM(S): Mycobacterium marinum ATCC BAA-535 Bacteria

2023-01-19 | PXD037981 | Pride

Mycobacteria Esx-5 secretion system Zebrafish. Compounds Type vii secretion system Label-free quantification

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