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ProteomicsiTRAQ-based proteomic analysis reveals genome-wide protein expression patterns in allohexaploid bread wheat in adaptation to potassium deficiency and an important role of jasmonic acid
Two-week old bread wheat seedlings hydroponically grown Hoagland solution were transferred to potassium (K+)-free conditions for 8 d, their root and leaf proteome profiles were assessed using iTRAQ proteome method, and NCBInr database combined with the recently published bread wheat genome informati...
ORGANISM(S): Triticum aestivum (Wheat) 
2017-10-09 | PXD003570 | Pride
Jasmonic acid Triticum aestivum l. Itraq Potassium deficiency 
ProteomicsHelianthus annuus (sunflower) allergen identification by mass spectrometry
Background: Respiratory allergy triggered by pollen allergens is increasing at an alarming rate worldwide. Sunflower pollen is thought to be an important source of inhalant allergens. Present study aims to identify the prevalence of sunflower pollinosis among the Indian allergic population and chara...
ORGANISM(S): Helianthus annuus (Common sunflower) 
2015-10-05 | PXD002397 | Pride
Ncbinr Allergen Lc esi qtof Maldi tof/tof Est library of helianthus annuus 
ProteomicsRoot shotgun proteomics from Fe- and Mn-deficient and Mn-toxic tomato plants
The aim of this work was to study the effects of Fe and Mn deficiencies and Mn toxicity on the protein profile of the root of tomato (Solanum lycopersicum), with the aim of elucidating plant response mechanisms to these nutritional stresses. Tomato was chosen as a model plant because the tomato geno...
ORGANISM(S): Solanum lycopersicum 
2018-08-06 | PXD008326 | Pride
Iron deficiency  mn deficiency  mn toxicity  shotgun proteomics  tomato  root 
ProteomicsiTRAQ-based quantitative serum proteomic analysis in ischemic stroke patients
Hemorrhagic transformation (HT), which occurs with or without reperfusion treatments (thrombolysis and/or thrombectomy), deteriorates the outcomes of ischemic stroke patients. It is essential to find clinically reliable biomarkers that can predict HT. In this study, we screened for potential serum b...
ORGANISM(S): Homo sapiens (Human) 
2021-10-12 | PXD026950 | Pride
Hemorrhagic transformation Itraq Serum proteomics Acute ischemic stroke 
ProteomicsRescuing discarded spectra: Full comprehensive analysis of a minimal proteome.
A common problem encountered when performing large-scale mass spectrometry proteome analysis is the loss of information due to the high percentage of unassigned spectra. To determine the causes behind this loss we have analyzed the proteome of one of the smallest living bacteria that can be grown ax...
ORGANISM(S): Mycoplasma pneumoniae (strain ATCC 29342 / M129) 
2016-01-05 | PXD002779 | Pride
Translation errors : mass spectroscopy Post-translational modifications (ptms) Protein identification Proteome coverage Unassigned spectra 
ProteomicsAn improved protocol to study the plant cell wall proteome
Cell wall proteins were extracted from alfalfa stems according to a 3-steps extraction procedure using sequentially CaCl2, EGTA and LiCl-complemented buffers. The efficiency of this protocol for extracting cell wall proteins was compared with the 2 previously published methods optimized for alfalfa...
ORGANISM(S): Medicago sativa (Alfalfa) 
2015-04-14 | PXD001927 | Pride
Lc-msms Stem Proteomics 2d-gel electrophoresis Alfalfa Cell wall 
ProteomicsNa2CO3-responsive proteins in chloroplasts from Puccinellia tenuiflora leaves
As the organelles in which photosynthesis occurs, chloroplasts are extremely susceptible to saline-alkali stress. Proteins from chloroplast were identified and quantified by isobaric tags for relative and absolute quantification (iTRAQ) strategy, and searched with both of Uniprot Liliposida database...
ORGANISM(S): Oryza sativa (Rice) 
2021-09-08 | PXD005491 | Pride
Na2co3 Chloroplasts Puccinellia tenuiflora Proteomics 
UnknownSkin mucus proteins of lumpsucker (Cyclopterus lumpus).
Not available
S-EPMC5614610 | biostudies-literature
ProteomicsLinking microbial community structure and function during the anaerobic digestion of grass
In this study, microbial communities from triplicate leach-bed anaerobic bioreactors digesting grass were analysed. Each reactor comprised two microbial fractions, one immobilized on grass (biofilm) and the other in a planktonic state present in the leachate. Microbial communities from the two fract...
ORGANISM(S): anaerobic digester metagenome 
2018-10-23 | PXD007956 | Pride
Anaerobic digestion  metaproteomics  grass 
UnknownIdentification and imaging of peptides and proteins on Enterococcus faecalis biofilms by matrix assisted laser desorption ionization mass spectrometry.
Not available
S-EPMC3654527 | biostudies-literature
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