Ncc - OmicsDI

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Unknown (953)
Transcriptomics (234)
Genomics (226)
Proteomics (48)
Methylation profiling (6)
Metabolomics (5)
Other (4)
Clinical (2)

Organisms

Homo sapiens (145)
Mus musculus (90)
Gallus gallus (13)
Arabidopsis thaliana (8)
Danio rerio (8)
Drosophila melanogaster (6)
Rattus norvegicus (6)
Agrobacterium tumefaciens (3)
Coturnix japonica (3)
Lactobacillus johnsonii (3)
Saccharomyces cerevisiae (3)
Anas platyrhynchos (2)
Sus scrofa (2)
Schmidtea mediterranea (2)
Agaricus bisporus (1)
Cyanothece sp. (1)
Agrobacterium larrymoorei (1)
Callithrix jacchus (1)
Dictyostelium discoideum (1)
Columba livia (1)
Chlamydomonas reinhardtii (1)
Xenopus laevis (1)
Medicago truncatula (1)
Schizosaccharomyces pombe (1)
Anopheles gambiae (1)
Populus tremula x Populus alba (1)
Caenorhabditis elegans (1)
Canis lupus familiaris (1)
Burkholderia cenocepacia (1)
Clostridium acetobutylicum ATCC 824 (1)

Organisms

Homo sapiens (68)
Mus musculus (40)
Danio rerio (9)
Gallus gallus (5)
Schmidtea mediterranea (2)
Rattus norvegicus (2)
Saccharomyces cerevisiae (2)
Lactobacillus johnsonii NCC 533 (1)
Haslea ostrearia (1)
Kregervanrija delftensis (1)
Mycolicibacterium sp. NCC-Tsukiji (1)
Plasmodium falciparum (1)
Bifidobacterium longum (1)
Neurospora crassa (1)
Limosilactobacillus fermentum (1)
Podarcis muralis (1)

Repository

biostudies-arrayexpress (175)
ENA (174)
geo (108)
pride (21)
EGA (12)
jPOST (12)
MassIVE (12)
iProX (3)
MetaboLights (3)
GNPS (1)
GPMDB (1)
MetabolomicsWorkbench (1)

Tissue

Epithelial cell (4)
Cell culture (4)
Kidney (3)
Urine (2)
Diploid cell (2)
Bacterial cells (1)
Bladder urothelial cell (1)
Cell in vitro (1)
Neuroblast (1)
Epithelial cell of cervix (1)
Permanent cell line cell (1)
B cell (1)
Saliva (1)
Blood (1)

Disease

Rheumatoid arthritis (2)
GIP-dependent Cushing's syndrome (1)
Astrocytoma III (1)
Normal (1)
Advanced or recurrent solid cancer (non-small cell lung cancer, breast cancer, gastric cancer, colorectal cancer, pancreatic cancer, or biliary tract cancer) (1)
Solid tumors (Brain tumor, Thyroid cancer, Parathyroid cancer, Breast cancer, Lung adenocarcinoma, Lung squamous cell carcinoma, Tongue cancer, Carcinoma of the oral cavity, Pharyngeal cancer, Esophageal cancer, Gastric cancer, Carcinoma of the small intestine, Colon cancer, Rectal cancer, Gastrointestinal stromal tumor, Hepatocellular carcinoma, Intrahepatic bile duct cancer, Extrahepatic bile duct cancer, Gallbladder cancer, Ampullary cancer, Pancreatic cancer, Duodenal cancer, Renal cell carcinoma, Urothelial carcinoma, Bladder cancer, Prostate cancer, Carcinoma of the cervix uteri, Carcinoma of the corpus uteri, Ovarian cancer, Skin cancer) (1)
Not Available (1)
Conn's syndrome (1)
Hypertension (1)
Retinoblastoma (1)
Neuroblastoma (1)

Technology Type

Mass Spectrometry (22)
Shotgun proteomics (16)
Mass spectrometry (3)
Gel-based experiment (2)
Illumina MiSeq, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
ESI (1)
SRM/MRM (1)
Bottom-up proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

NextSeq 500 (6)
Q Exactive (6)
Illumina HiSeq 4000 (3)
Illumina NovaSeq X (2)
Illumina NovaSeq 6000 (2)
Q Exactive HF-X (2)
Q Exactive Plus (2)
G2565BA DNA microarray scanner (1)
BD Fortessa (1)
MS200 NimbleGen scanner (1)
Illumina HiSeq 1000 (1)
BGISEQ-500 (1)
Illumina HiSeq 2500 (1)
Instrument (1)
Bruker TimsTof Pro (1)
Agilent 7890A GC coupled to a 5975C inert XL MSD (1)
Synapt MS (1)
TimsTOF Pro 2 (1)
LTQ Orbitrap (1)
Orbitrap Fusion Lumos (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2015 (24)
2010 (24)
2025 (22)
2011 (22)
2024 (21)
2016 (21)
2012 (21)
2014 (20)
2022 (20)
2023 (19)
2026 (17)
2021 (17)
2013 (16)
2008 (13)
2017 (11)
2019 (11)
2009 (9)
2018 (8)
2020 (8)
2007 (3)
2006 (3)
2005 (2)

CHEBI ID

CHEBI:57464 (1)
CHEBI:58027 (1)
CHEBI:58083 (1)
CHEBI:23958 (1)
CHEBI:28721 (1)
CHEBI:46960 (1)
CHEBI:27353 (1)
CHEBI:58053 (1)
CHEBI:24156 (1)
CHEBI:37434 (1)
CHEBI:49168 (1)
CHEBI:30765 (1)
CHEBI:181895 (1)
CHEBI:58273 (1)
CHEBI:139382 (1)
CHEBI:57483 (1)
CHEBI:57642 (1)
CHEBI:57865 (1)
CHEBI:37051 (1)
CHEBI:5445 (1)
CHEBI:68455 (1)
CHEBI:76301 (1)
CHEBI:75323 (1)
CHEBI:78757 (1)
CHEBI:104011 (1)
CHEBI:33954 (1)
CHEBI:16796 (1)
CHEBI:2089 (1)
CHEBI:28171 (1)
CHEBI:89843 (1)

Metabolite Name

Acetoacetic acid (2)
Juniperic acid (2)
Isobutyrylglycine (2)
5'-Methylthioadenosine (2)
7-Methylguanine (2)
Kynurenic acid (2)
Urea (2)
3-Hydroxyphenylacetic acid (2)
Cholesterol (2)
Stearic acid (2)
Hippuric acid (2)
Oleamide (2)
Spermidine (2)
Xylitol (2)
Dihydroxyacetone phosphate (2)
Uracil (2)
Hypoxanthine (2)
Glycine (2)
Creatinine (2)
Uric acid (2)
Xanthosine monophosphate (1)
Vanilmandelic acid (1)
ParaXanthine (1)
O-Phospho-Serine (1)
N-Acetyl-Ornithine (1)
Dopa (1)
3-Hydroxy-kynurenine (1)
3-Aminoglutaric acid (1)
2,3-Bisphosphoglyceric acid (1)
1,6-Anhydroglucose (1)

First Public Date

2025 (23)
2022 (22)
2023 (21)
2024 (18)
2026 (16)
2021 (15)
2019 (11)
2017 (11)
2014 (11)
2018 (10)
2020 (8)
2013 (4)
2016 (2)
2015 (2)

Classification

protozoa (1)

Study status

Recruiting (1)
Completed (1)

Study type

Transcription profiling by array (109)
ChIP-seq (19)
RNA-seq of coding RNA (16)
Unknown experiment type (8)
Comparative genomic hybridization by array (5)
Single nucleus RNA sequencing (4)
RNA-seq of coding RNA from single cells (3)
Genotyping by array (2)
Transcription profiling by SAGE (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Hi-C (1)
Other (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)
Observational (1)
Interventional (1)

Release Date

2022 (107)
2025 (101)
2024 (88)
2023 (88)
2021 (87)
2020 (78)
2019 (69)
2016 (65)
2015 (65)
2017 (53)
2018 (51)
2014 (49)
2011 (41)
2013 (35)
2012 (35)
2010 (34)
2008 (24)
2009 (17)
2026 (15)
2007 (6)
2006 (6)
2005 (4)
2004 (2)
2003 (2)
2002 (2)
2001 (2)
2000 (1)
1998 (1)

Lab affiliation

Centre for Gene Regulation and Expression School of Life Sciences, University of Dundee, Dundee (2)
Institute of biomedicine, Aarhus University (1)
Institute of Biomedicine, Aarhus University (1)
InterPrET Center, Department of Biomedicine, Aarhus University (1)
department of internal medicine, university of new mexico (1)
Max Planck Institute of Biochemistry, Dept. of Proteomics and Signal Transduction (1)
Section Mass Spectrometry and Proteomics, University Medical Center Hamburg-Eppendorf (UKE), 20246 Hamburg, Germany (1)
Center for Interactions of Proteins in Epithelial Transport, Department of Biomedicine, Aarhus University (1)
InterPrET Center, Department of Biomedicine, Aarhus University, Aarhus, Denmark (1)
Dr. Sailaja Elchuri Associate Professor Department of Nanotechnology Vision Research Foundation Sankara Nethralaya Chennai 600006 (1)
Zentrallabor fuer Proteinanalytik BMC - LMU Munich Schillerstrasse 44 Munich D-80336 Germany (1)
Helmholtz-Zentrum für Umweltforschung, Department of Molecular Systems Biology (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15 04318 Leipzig, Germany (1)
Wellcome Centre for Cell Biology University of Edinburgh Michael Swann Building Max Born Crescent Edinburgh EH9 3BF Scotland, UK (1)
The Novo Nordisk Center for Protein Research (CPR), University of Copenhagen, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
Wellcome Centre for Cell Biology, Edinburgh (1)
Centre for Gene Regulation and Expression School of Life Sciences, University of Dundee (1)
Proteomics Core Facility, University of Gothenburg, Sweden (1)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 4767 (1)

Location

Japan (2)

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Analysis of histone PTMs in nascent chromatin in new and old histones upon DNA damage (CAL353, CAL358) using the NCC-SILAC approach

Dynamic recycling and de novo deposition of histones are fundamental for chromatin restoration. Histone post-translational modifications (PTMs) are assumed to have a causal role in establishing distinct chromatin structures. However, it remains unknown how specific histone PTMs are regulated at brok...

ORGANISM(S): Homo sapiens (Human)

2021-01-18 | PXD018220 | Pride

Kregervanrija delftensis strain:NCC-J

Kregervanrija delftensis strain:NCC-J Genome sequencing and assembly

PRJNA706002 | ENA

Bifidobacterium longum strain:NCC 5000 2951181949(IMG)

Bifidobacterium longum strain:NCC 5000 2951181949(IMG) Genome sequencing

PRJNA1059663 | ENA

SLC12A3 isoforms in human urine exosomes

The thiazide-sensitive NaCl cotransporter (NCC) is an important pharmacological target in the treatment of hypertension. Human SLC12A3 gene encoding NCC gives rise to three isoforms. Only the isoform 3 has been extensively investigated. The goal of the present study was, therefore, to determine the ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-29 | MSV000080722 | MassIVE

Lactobacillus johnsonii NCC 533

Human isolate that has immunomodulation properties and inhibits pathogens

PRJNA9638 | ENA

Transcriptome analysis of iTeO, TeO and NCC

PRJNA986497 | ENA

Epigenomic profiling of enhancers identifies orphan nuclear receptors NR2F1 and NR2F2 as novel regulators of human neural crest.

Combining an in vitro hNCC differentiation protocol with epigenomic profiling, we provide the first whole-genome characterization of cis-regulatory elements in this highly relevant cell type. With this data at hand, we have characterized the chromatin state and dynamics of all human gene promoters d...

ORGANISM(S): Gallus gallus

2012-09-13 | E-GEOD-38066 | biostudies-arrayexpress

Mycolicibacterium sp. NCC-Tsukiji

Draft genome sequence of Mycolicibacterium sp. strain Tsukiji isolated from blood culture of hematooncology patient.

PRJDB7019 | ENA

NCC regulation by WNK signal cascade.

Not available

S-EPMC9845728 | biostudies-literature

Proteomic profiling reveals distinct phases to the restoration of chromatin following DNA replication

Chromatin organization must be maintained during cell proliferation to preserve cellular identity and genome integrity. However, DNA replication results in transient displacement of DNA bound proteins, and it is unclear how they regain access to newly replicated DNA. Using quantitative MS-based prot...

ORGANISM(S): Homo sapiens (Human)

2023-02-02 | PXD035489 | Pride

Chromatin Dna repair Access to dna Cell cycle Restoration Heterochromatin Euchromatin Transcription factors Dna replication Propagation

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1478 Results

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