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Transcriptomics (15)
Proteomics (8)
Metabolomics (3)
Genomics (2)
Unknown (1)

Organisms

Homo sapiens (11)
Biomphalaria glabrata (5)
Mus musculus (5)
Macaca fascicularis (1)
Apis mellifera (1)
Nicotiana benthamiana (1)

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biostudies-arrayexpress (17)
pride (7)
MetaboLights (3)
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Blood (2)
Blood cell (1)
CD4-positive helper T cell (1)
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Disease

Sindbis virus + non-specific RNA (1)

Technology Type

Mass Spectrometry (7)
Shotgun proteomics (4)
Mass spectrometry assay (2)
Mass spectrometry (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (1)
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2013 (4)
2012 (3)
2011 (3)
2010 (3)
2021 (3)
2014 (2)
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Metabolite Name

1,3-Diaminopropane (1)
1-Methylnicotinamide (1)
2,5-Furandicarboxylic acid (1)
2-Hydroxy-2-methylbutyric acid (1)
2-Hydroxy-3-methylvaleric acid (1)
2-Hydroxybutyric acid (1)
2-Hydroxyisobutyric acid (1)
2-Hydroxyisovaleric acid (1)
2-Hydroxyphenylacetic acid (1)
2-Methylhippuric acid (1)
2-Oxoisocaproic acid (1)
2-hydroxyglutaric acid (1)
2-oxoadipic acid (1)
3,4-Dihydroxybutyric acid (1)
3-Aminoisobutanoic acid (1)
3-Aminoisobutyric acid (1)
3-Deoxyglucosone (1)
3-Hydroxybutyric acid (1)
3-Hydroxyisobutyric acid (1)
3-Hydroxyisovaleric acid (1)
3-Hydroxyphenylacetic acid (1)
3-Hydroxysebacic acid (1)
3-Indoleacetic acid (1)
3-Methoxytyramine (1)
3-Methyladipic acid (1)
4-Ethylphenyl sulfate (1)
4-Hydroxybenzoic acid (1)
4-Hydroxyphenylacetic acid (1)
4-Hydroxyphenylpyruvic acid (1)
5-Hydroxyindoleacetic acid (1)

Study type

Transcription profiling by array (11)
RNA-seq of coding RNA (2)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2013 (4)
2014 (3)
2012 (3)
2011 (3)
2010 (3)
2015 (1)
2009 (1)

Lab affiliation

Precision and Systems Biomedicine Laboratory, QIMR Berghofer Medical Research Institute, Herston, QLD, Australia (1)
QIMR Berghofer Medical Research Institute, Precision & Systems Biomedicine, Herston, Brisbane, Queensland, Australia (1)
QIMR Berghofer Medical Research Institute, Brisbane QLD 4006, Australia (1)
QIMR Berghofer Medical Research Institute, Herston, QLD, Australia. Faculty of Medicine, The University of Queensland, Brisbane, QLD, Australia (1)
The University of Queensland Diamantina Institute, The University of Queensland, Level 5, Translational Research Institute, 37 Kent Street, Woolloongabba, QLD 4102 Australia (1)
The University of Queensland Diamantina Institute, University of Queensland, Translational Research Institute, Brisbane QLD 4102, Australia and QIMR Berghofer Medical Research Institute, Brisbane QLD 4006, Australia (1)
USDA-ARS, Boyce Thompson Institute, Cornell University (1)

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Phase I dose-escalation study of 5-day intermittent oral lapatinib therapy in patients with human epidermal growth factor receptor 2-overexpressing breast cancer.

Not available

S-EPMC4017711 | biostudies-literature

Identification of candidate circulating glucocorticoid response biomarkers in humans using a proteomic approach

Glucocorticoids used in pharmacological doses for the treatment of a variety of medical conditions, and endogenous glucocorticoid excess – Cushing’s syndrome, may result in several adverse effects, but currently there is no clinically useful biomarker of glucocorticoid activity. A three-phase prote...

ORGANISM(S): Homo sapiens (Human)

2021-03-14 | PXD019945 | Pride

Size resistance in M-line Biomphalaria glabrata

Transcriptional profiles of snails sized 12-20mm exposed to E. paraensei and unexposed controls Keywords: Dose response Five individual snails from the treatment group were analyzed at 12hours, 1, 2, 4, 8, and 16 days. Five unexposed control snails were also analyzed.

ORGANISM(S): Biomphalaria glabrata

2010-08-01 | E-GEOD-21880 | biostudies-arrayexpress

RNA modification dynamics during Enterococcus faecalis OG1RF growth

Quantitative analysis of relative levels of RNA modifications in small (primarily tRNA) and large (primarily 16S/23S rRNA) RNAs isolated from Enterococcus faecalis OG1RF across a growth time course in BHI media.

2026-08-20 | MTBLS14602 | MetaboLights

Identifying transcription start sites and active enhancer elements using BruUV-seq

BruUV-seq utilizes UV light to introduce transcription-blocking DNA lesions randomly in the genome prior to bromouridine-labeling and deep sequencing of nascent RNA. By inhibiting transcription elongation, but not initiation, pre-treatment with UV light leads to a redistribution of transcription rea...

ORGANISM(S): Homo sapiens

2015-12-21 | E-GEOD-75398 | biostudies-arrayexpress

Identification of candidate circulating glucocorticoid response biomarkers in humans using a proteomic approach

Context Glucocorticoids used in pharmacological doses for the treatment of a variety of medical conditions, and endogenous glucocorticoid excess – Cushing’s syndrome, may result in several adverse effects, but currently there is no clinically useful biomarker of glucocorticoid activity. Objective T...

ORGANISM(S): Homo Sapiens

2021-03-15 | PXD019972 | panorama

Lipidomic analysis of Drosophila on different sugar feeding regimes +/- trametinib

Consumption of sugar-rich diets adversely affects health and reduces life expectancy through the excessive production and storage of triacylglycerides (TAGs) leading to metabolic dysfunction. Here, using Drosophila melanogaster, we identify the conserved Ras/MAPK signalling pathway as a key media...

2026-09-02 | MTBLS14468 | MetaboLights

BS-90 strain resistance in M-line Biomphalaria glabrata

Transcriptional profiles ofBS-90 snails sized 8-12mm exposed to E. paraensei (BS-90 are susceptible) and S. mansoni (BS-90 are resistant) and unexposed controls Keywords: Dose response Five individual snails from the treatment group were pooled to make up 3 repliactes. After exposure to the indica...

ORGANISM(S): Biomphalaria glabrata

2010-08-01 | E-GEOD-21881 | biostudies-arrayexpress

Antibody-free multiplex measurement of 23 human cytokines in primary cell culture secretome using targeted multiple reaction monitoring mass spectrometry

Cytokines are commonly measured by immunoassays, which have limited multiplexing capacity, are costly and can exhibit cross-reactivity. Although multiple reaction monitoring (MRM) mass spectrometry is a cost-effective method for multiplex measurement of peptides, the ability to detect the relatively...

ORGANISM(S): Homo sapiens (Human)

2020-02-19 | PXD015407 | Pride

Human Cytokine Secretome

Orthotopic xenografts of RCC retain histological, immunophenotypic and genetic features of tumors in patients

Development of a clinically relevant animal models of RCC for preclinical investigations. For DNA copy number analysis, the Sty I (250K) SNP array of the 500K Human Mapping Array (Affymetrix) was used. Arrays were scanned by GeneChip Scanner 3000 7G. Probe-level signal intensities were normalized to...