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TranscriptomicsOrganogenic nodule formation from internodes of Humulus lupulus
Transcriptional profiling of hop samples throughout in vitro culture on medium with sucrose and hormones IAA and BAP Study of gene expression involved in stress response during in vitro culture and in organogenic nodule formation Hop (Humulus lupulus L.) is an economically important plant forming ...
ORGANISM(S): Humulus lupulus 
2008-09-01 | E-GEOD-12339 | biostudies-arrayexpress
ProteomicsPersulfidation of plant and bacteroid proteins is involved in legume nodule development and senescence
Legumes establish symbiosis with soil rhizobia forming root nodules that fix atmospheric nitrogen. The central role of reactive oxygen species (ROS) and reactive nitrogen species (RNS) in nodule biology has been clearly established. Recently, hydrogen sulfide (H2S) and other reactive sulfur species ...
ORGANISM(S): Phaseolus vulgaris (Kidney bean) (French bean) 
2024-06-16 | PXD039852 | Pride
Legumes Nodule development Post-translational modifications Symbiosis Persulfidation Nodule senescence Redox regulation 
TranscriptomicsTranscription profiling of soybean nodulation by Bradyrhizobium japonicum
Legumes interact with nodulating bacteria that convert atmospheric nitrogen into ammonia for plant use. This nitrogen fixation takes place within root nodules that form after infection of root hairs by compatible rhizobia. Using cDNA microarrays, we monitored gene expression in soybean (Glycine max)...
ORGANISM(S): Glycine max 
2008-02-04 | E-GEOD-10340 | biostudies-arrayexpress
TranscriptomicsExpression data of Nodule Cysteine-Rich (NCR) Defensin-Like (DEFL) genes in different stages of nodule development in Medicago truncatula
We have undertaken a detailed study to identify mechanisms regulating expression of NCRs. We used a custom Affymetrix oligonucleotide microarray to examine the expression changes of 566 NCRs in different stages of nodule development. Additionally, rhizobial mutants were used to understand the import...
ORGANISM(S): Medicago truncatula 
2013-03-05 | E-GEOD-34803 | biostudies-arrayexpress
TranscriptomicsA Ca2+/calmodulin-dependent protein kinase required for symbiotic nodule development: Gene identification by transcript-based cloning
Trancript Based Cloning (TBC) uses standard Gene Expression techniques to quickly isolate genes of interest and begin to determine their function. Using a particular mutant phenotype, identified during a programme of mutagenesis and screning, and a wild-type control we can quickly determine a list o...
ORGANISM(S): Hordeum vulgare 
2011-11-22 | E-GEOD-33397 | biostudies-arrayexpress
Genomicsnar nodule vs root transcriptome-analysis of symbiotic root nodule development
nar nodule vs root transcriptome-analysis of symbiotic root nodule development
PRJNA497890 | ENA
TranscriptomicsTranscription profiling of Lotus japonicus major organ systems including nodule and seed development
Lotus japonicus is a perennial legume with a small diploid genome that has been adopted as a model species for legume genetics and genomics. With the genome sequence as a backdrop (Sato et al. 2008), we have generated a gene expression atlas that provides a global view of gene expression in all majo...
ORGANISM(S): Lotus japonicus 
2010-12-22 | E-MEXP-1726 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of wild type, Mtefd-1 mutant and pPEX-35SMtEFD transformed Medicago truncatula root nodules at 4 and 10 days post innoculation with Sinorhizobium meliloti
Comparison of WT and efd-1 nodule transcriptome, using isolated nodules, at 4 and 10 dpi. Search of EFD possible targets by comparison of transcriptomes from empty vector-tranformed vs. 35S:EFD roots.
ORGANISM(S): Medicago truncatula 
2008-06-01 | E-TABM-393 | biostudies-arrayexpress
GenomicsMtBZR1 plays an important role in nodule development in Medicago truncatula
MtBZR1 plays an important role in nodule development in Medicago truncatula
PRJNA545836 | ENA
MetabolomicsDissecting Metabolism of Leaf Nodules in Ardisia crenata and Psychotria punctata
Root-microbe interaction and its specialized root nodule structures and functions are well studied. In contrast, leaf nodules harboring microbial endophytes in special glandular leaf structures have only recently gained increased interest as plant-microbe phyllosphere interactions. Here, we applied ...
2021-08-26 | MTBLS2870 | MetaboLights
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