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UnknownPredicting HLA class II antigen presentation through integrated deep learning.
Not available
S-EPMC7075463 | biostudies-literature
TranscriptomicsDiurnal gene expression in Populus wild type and lhy RNAi line 10
Previous studies have shown that a considerable proportion of the Arabidopsis genome cycles under circadian and/or diurnal conditions (Edwards et al., 2006 PMID: 16473970, Blaesing et al., 2005 PMID 16299223). It is likely that the correct phasing of gene expression plays an important role in improv...
ORGANISM(S): Populus tremula x Populus tremuloides 
2018-03-13 | E-MTAB-4516 | biostudies-arrayexpress
TranscriptomicsExosomes mediate protective messages during oxidative stress; role of exosomal shuttle RNA
Exosomes are small extracellular nano-vesicles of endocytic origin that mediate different signals between cells, by surface interactions and by shuttling of functional RNA from one cell to another. In this study, we show that exosomes, produced by mouse mast cells exposed to oxidative stress, change...
ORGANISM(S): Mus musculus 
2011-01-07 | E-GEOD-24886 | biostudies-arrayexpress
ProteomicsMass spectrometry (LC-MS) of survivin binding proteins immunoprecipitated from human THP1 cells
The oncoprotein survivin, coded by BIRC5 gene has been shown to bind to chromatin. Chromatin immunoprecipitation of stimulated CD4+ T cells with survivin has been published (GSE190354). The role of survivin in transcriptional regulation acting in synergy with transcription factor complexes has been ...
ORGANISM(S): Homo sapiens (Human) 
2025-05-06 | PXD049683 | Pride
Human Lc-ms Immunoprecipitation Survivin Thp1 
UnknownEffect of mutations on the thermostability of Aspergillus aculeatus β-1,4-galactanase.
Not available
S-EPMC4412966 | biostudies-literature
TranscriptomicsEpigenome-wide DNA methylation profiling in cord blood CD4+ T cells from children treated prenatally with Lactobacillus reuteri and/or omega-3 fatty acids
In this study, we have examined the effect of combined prenatal Lactobacillus reuteri and omega-3 fatty acid supplementation on DNA methylation patterns in neonatal immune cells from children with a high propensity of developing allergies. We addressed this matter by assessing epigenome-wide DNA met...
ORGANISM(S): Homo sapiens 
2021-03-31 | E-MTAB-10341 | biostudies-arrayexpress
OtherA Protein Deep Sequencing Evaluation of Metastatic Melanoma Tissues.
Data from ProteomeXchange, .PXD ID: PXD001724. Experiment: M35_003, file: folder summary. Published as part of PLoS One. 2015 Apr 13;10(4):e0123661 . From the Abstract: {{i}} ... The aim of the present study was to build a protein sequence database in metastatic melanoma, searching for novel, relev...
ORGANISM(S): Homo_sapiens_viruses, Human 
GPM32310019253 | GPMDB
Resource Reanalysis 
ProteomicsA Protein Deep Sequencing Evaluation of Metastatic Melanoma Tissues, fractionated approach
Malignant melanoma has currently the highest increase of incidence of malignancies in the western world. In early stages, front line therapy is surgical excision of the primary tumor. Metastatic disease has previously has very limited possibilities to be cured. Recently, several protein kinase inhib...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-10-23 | MSV000080282 | MassIVE
ProteomicsA Protein Deep Sequencing Evaluation of Metastatic Melanoma Tissues, unfractionated approach
Malignant melanoma has currently the highest increase of incidence of malignancies in the western world. In early stages, front line therapy is surgical excision of the primary tumor. Metastatic disease has previously has very limited possibilities to be cured. Recently, several protein kinase inhib...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-10-23 | MSV000080280 | MassIVE
UnknownTwelve novel HGD gene variants identified in 99 alkaptonuria patients: focus on 'black bone disease' in Italy.
Not available
S-EPMC4795215 | biostudies-literature
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