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UnknownDDA-imaging with structural identification of lipid molecules on an Orbitrap Velos Pro mass spectrometer.
Not available
S-EPMC9541402 | biostudies-literature
OtherGel-based mass spectrometric analysis of hippocampal transmembrane proteins using high resolution LTQ Orbitrap Velos Pro.
Data from ProteomeXchange, PXD ID: PXD000311. Enzyme: trypsin, file: F017572.dat-ACA-SDS_T3.mzml. Published as part of Proteomics. 2014 Jul 10 . From the Abstract: {{i}} ... Proteins were extracted from pooled whole mouse brains, enriched membrane fractions were prepared using either two commercial...
ORGANISM(S): Mus_musculus_viruses, Mouse 
GPM32310002988 | GPMDB
Resource Reanalysis 
ProteomicsTargeted Proteomics of NERD and FLS2 on LTQ-Orbitrap Velos Mass Spectrometer
Targeted proteomics has become increasingly popular recently because of its ability to precisely quantify selected proteins in complex cellular backgrounds. We demonstrate the utility of an LTQ-Orbitrap Velos Pro mass spectrometer in targeted parallel reaction monitoring (PRM) despite its unconventi...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2015-12-09 | PXD001119 | Pride
Ltq-orbitrap Prm Fls2 Targeted proteomics Nerd 
MetabolomicsLipid Data Analyzer: The LDA algorithm against the in silico library LipidBlast (LipidBlast benchmarking experiment)
Lipid Data Analyzer (LDA; http://genome.tugraz.at/lda2) provides automated and reliable annotation of lipid species and their molecular structures in high-throughput data from chromatography-coupled tandem mass spectrometry using embedded rule sets. Using various low- and high-resolution mass spectr...
2017-11-07 | MTBLS397 | MetaboLights
ProteomicsAnalysis of mouse hippocampus membrane proteome by gel-based LC/MS
Mouse hippocampus membrane fractions were prepared using sucrose density gradient ultracentrifugation. Membrane proteins were solubilized using three different condition; 6-ACA/Triton X-100 or ProteoExtract Native Membrane Protein Extraction Kit (Calbiochem, Cat. No. 444810) or ProteoExtract Transme...
ORGANISM(S): Mus musculus (Mouse) 
2014-08-15 | PXD000311 | Pride
Mouse hippocampus Ltq orbitrap velos pro Membrane proteins Gel-based proteomics In-gel chymotrypsin/trypsin digestion 
ProteomicsOptimizing chromatographic conditions for orbitrap-based MS platforms
We compared the performance of multidimensional protein identification (MudPIT) on Velos Pro Orbitrap (VPO) and Velos Orbitrap Elite (VOE) mass spectrometers to single dimension reversed phase (RP) chromatography on a Q Exactive Plus (QE+) and an Orbitrap Fusion™ Lumos™ (OFL). Using a digested HeLa...
ORGANISM(S): Homo sapiens (Human) 
2019-03-04 | PXD009875 | Pride
Reproducibility Data-dependent acquisition Chromatography Q exactive Fusion lumos Human Pearson product-moment correlation coefficient Distributed normalized spectral abundance factor Orbitrap Quantitative proteomics Multidimensional protein identification technology 
UnknownEvaluating Chromatographic Approaches for the Quantitative Analysis of a Human Proteome on Orbitrap-Based Mass Spectrometry Systems.
Not available
S-EPMC6839767 | biostudies-literature
ProteomicsProfiling of HLA-I ligandomes discovers novel cervical cancer-associated antigens
The product ion scans were acquired with a 2.0-unit isolation width and a normalized collision energy of 35 in an LTQ-Orbitrap Velos Pro MS spectrometer (Orbitrap Velos Pro, Thermo Fisher Scientific, US).
ORGANISM(S): Homo Sapiens 
PXD042745 |
MetabolomicsMetabolite profiling of the fermentation process of yamahai-ginjo-shikomi Japanese sake
Sake is a traditional Japanese alcoholic beverage prepared by multiple parallel fermentation of rice. The fermentation process of yamahai-ginjo-shikomi sake is mainly performed by three microbes, Aspergillus oryzae, Saccharomyces cerevisiae, and Lactobacilli; the levels of various metabolites fluctu...
2018-06-29 | MTBLS451 | MetaboLights
MetabolomicsGanhai Weikang Capsules Improve Functional Dyspepsia in Rats by Modulating Gut Microbiota and Host Metabolism
The chemical constituents of GHWKCs were identified using UPLC-LTQ-Orbitrap-MS, and untargeted metabolomics analysis was performed on the duodenum of the model rats.
2026-07-16 | MTBLS14314 | MetaboLights
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