Sort   by:  
 Page size 
TranscriptomicsTransposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata
This SuperSeries is composed of the following subset Series: GSE24571: Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata [RNA-Seq] GSE38109: Natural variation in Arabidopsis thaliana transcriptomes Refer to individual Se...
ORGANISM(S): Arabidopsis thaliana 
2012-05-21 | E-GEOD-38113 | biostudies-arrayexpress
GenomicsGenome-wide identification of KANADI1 target genes
A combination of ChIP-Seq and genome-wide mRNA expression profiling using tilling arrays was used to identify genes bound and regulated by the KANADI1 transcription factor. A. thaliana KAN1 ChIP-seq w. control, 2 replicates This submission represents ChIP-Seq component of study.
ORGANISM(S): Arabidopsis thaliana 
2013-11-22 | E-GEOD-48081 | biostudies-arrayexpress
GenomicsOrchestration of development by the bifunctional transcription factor, APETALA2
The emerging picture of transcriptional regulation is one of unexpected complexity. It is now clear that single transcription factors control hundreds, if not thousands, of direct targets by binding their genomic loci, but it is not understood how many of these are major players and how many are sup...
ORGANISM(S): Arabidopsis thaliana 
2010-04-13 | E-GEOD-21301 | biostudies-arrayexpress
TranscriptomicsTransposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata [RNA-Seq]
Transposable elements (TEs) are often the primary determinant of genome size differences among eukaryotes. In plants, the proliferation of TEs is countered through epigenetic silencing mechanisms that prevent transposition. Recent studies using the model plant Arabidopsis thaliana have revealed that...
ORGANISM(S): Arabidopsis lyrata 
2011-02-11 | E-GEOD-24571 | biostudies-arrayexpress
TranscriptomicsNatural variation in Arabidopsis thaliana transcriptomes
A major effort is underway to study the natural variation within the model plant species, Arabidopsis thaliana. Much of this effort is focused on genome resequencing, however the translation of genotype to phenotype will be largely effected through variations within the transcriptomes at the sequen...
ORGANISM(S): Arabidopsis thaliana 
2012-05-21 | E-GEOD-38109 | biostudies-arrayexpress
GenomicsA biophysical DNA binding model for the LEAFY transcription factor reveals the evolutionary fluidity of its binding sites
Despite great advances in sequencing capacity, generating functional information for non-model organisms remains a challenge. One solution lies in an improved ability to predict genetic circuits based on primary DNA sequence combined with the characterization of regulatory molecules from model speci...
ORGANISM(S): Arabidopsis thaliana 
2011-05-13 | E-GEOD-24568 | biostudies-arrayexpress
GenomicsTemperature-dependent alternative splicing of FLM controls flowering in Arabidopsis thaliana
How plants control the transition to flowering in response to ambient temperature is only beginning to be understood. In Arabidopsis thaliana, the MADS-box transcription factor genes FLOWERING LOCUS M (FLM) and SHORT VEGETATIVE PHASE (SVP) have key roles in this process. FLM is subject to temperatu...
ORGANISM(S): Arabidopsis thaliana 
2013-09-19 | E-GEOD-48082 | biostudies-arrayexpress
TranscriptomicsNatural variation in processability of individual Arabidopsis thaliana microRNAs
Like protein coding genes, loci that produce microRNAs (miRNAs) are generally considered to be under purifying selection, consistent with miRNA polymorphisms being able to cause disease. Nevertheless, it has been hypothesized that variation in miRNA genes may contribute to phenotypic diversity. Here...
ORGANISM(S): Arabidopsis thaliana 
2012-10-31 | E-GEOD-32927 | biostudies-arrayexpress
TranscriptomicsHomology-guided Assembly of the Genomes of the Four Diverse Accessions Ler, C24, Bur-0 and Kro-0
Here we present the first whole-genome assemblies of Arabidopsis thaliana strains since the release of the 125 Mb reference genome sequence a decade ago. We demonstrate their practical relevance in studying the expression differences of polymorphic genes and show how the analysis of sRNA sequencing ...
ORGANISM(S): Arabidopsis thaliana 
2011-02-11 | E-GEOD-24569 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Lotus japonicus
Transcript profiling of mutant genotypes, treatment responses and organs
ORGANISM(S): Lotus japonicus 
2009-07-01 | E-TABM-715 | biostudies-arrayexpress
Sort   by:  
 Page size