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ProteomicsA novel mobile genomic island: introducing ‘cephalosporinase morons’ in Enterobacteriaceae
The exchange of mobile genomic islands (MGIs) between microorganisms is often mediated by phages. As a consequence, not only phage genes are transferred, but also genes that have no particular function in the phage's lysogenic cycle. If they provide benefits to the phage's host, such genes are refer...
ORGANISM(S): Enterobacter cloacae 
2018-08-21 | PXD007113 | Pride
"cephalosporin resistance " Enterobacteriaceae "mobile genomic islands " 
ProteomicsProteome Analysis of Actinoplanes sp. SE50/110
The acarviose metabolite acarbose is an a glucosidase inhibitor produced by Actinoplanes sp. SE50/110. It is medically important because it is used in the treatment of type 2 diabetes. In this work a comprehensive proteome analysis of Actinoplanes sp. SE50/110 was carried out. The associated txt and...
ORGANISM(S): Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) 
2015-10-21 | PXD001497 | Pride
Actinoplanes sp. se50/110 
ProteomicsBiochemical partitioning of RNA collectives reveals ProQ as a global RNA chaperone in bacteria
The vast number of noncoding RNAs in bacteria suggests that major post-transcriptional circuits beyond those controlled by the global RNA-binding proteins Hfq and CsrA may exist. To identify additional globally acting RNPs we have developed a method (gradient profiling by sequencing; Grad-seq) to pa...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 
2017-07-21 | PXD003360 | Pride
Salmonella enterica Ncrna 
ProteomicsThe response of B. pumilus cells to glucose starvation
In this study the proteome of soluble intracellular and extracellular samples have been analysed of the gram positive BAcillus pumilus.
ORGANISM(S): Bacillus pumilus 
2018-07-05 | PXD005602 | Pride
Keywords bacillus pumilus/ glucose starvation/ proteome 
ProteomicsIdentification of new protein-coding genes with a potential role in the virulence of the plant pathogen Xanthomonas campestris pv. vesicatoria
Bacteria of the genus Xanthomonas are economically important plant pathogens. Pathogenicity of Xanthomonas spp. depends on the type III-secretion system and additional virulence determinants. The number of sequenced Xanthomonas genomes increases rapidly, however, accurate annotation of these genomes...
ORGANISM(S): Xanthomonas campestris pv. vesicatoria str. 85-10 
2017-08-17 | PXD007140 | Pride
Ortho proteogenimic Genome re-annotation Proteogenome Translational start sites T3ss T4ss T6ss Xanthomonas 
GenomicsChimaeribacter arupi strain:DSM 115072 | cultivar:Andreas Zautner
Chimaeribacter arupi strain:DSM 115072 | cultivar:Andreas Zautner Genome sequencing and assembly
PRJNA940728 | ENA
ProteomicsShort cationic antimicrobial peptide RWRWRW-NH2 inhibits cell wall biosynthesis and bacterial respiration by delocalizing essential membrane proteins
Antimicrobial peptides are potent antibacterial agents. The subclass of short cationic RW-rich peptides is known to target the bacterial membrane. We employed the synthetic hexapeptide RWRWRW-NH2 to characterize in-depth the impact of short cationic RW-rich peptides on bacterial physiology and the b...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2014-03-06 | PXD000181 | Pride
Short cationic antimicrobial peptide Bacillus subtilis Antibiotics 
ProteomicsImpact of moderate temperature changes on Neisseria meningitidis adhesive phenotypes and proteome
Neisseria meningitidis, the meningococcus, bears the potential of life-threatening invasive diseases, but it usually colonizes the nasopharynx without causing any symptoms. Within the nasopharynx, Neisseria meningitidis must face temperature changes depending on the ambient air temperature. Indeed, ...
ORGANISM(S): Neisseria meningitidis serogroup B (strain MC58) 
2016-10-10 | PXD003690 | Pride
Temperature Sigma e Adhesion Biofilm Proteome Meningococcus 
ProteomicsTowards a quantitative assessment of the integral magnetosome membrane sub-proteome
Magnetosomes are membranous organelles than contain crystals of magnetic minerals and enable magnetotactic bacteria to orientate in magnetic fields. The enveloping magnetosome membrane was found to contain a subset of specific proteins that are encoded within a genomic island. However, along with pr...
ORGANISM(S): Magnetospirillum gryphiswaldense 
2017-10-24 | PXD006166 | Pride
Organelle Membrane proteome Magnetosome 
ProteomicsComparative proteomics of purified pathogen vacuoles correlates intracellular replication of Legionella pneumophila with the small GTPase Rap1
Legionella pneumophila is an opportunistic bacterial pathogen that causes a severe lung infection termed “Legionnaires’ disease”. The pathogen replicates in environmental protozoa as well as in macrophages within a unique membrane-bound compartment, the Legionella-containing-vacuole (LCV). Formation...
ORGANISM(S): Legionella 
2017-02-10 | PXD004797 | Pride
Host-pathogen interactions Macrophage Proteomics Phosphoinositide lipid Bacterial effector protein Legionella Type iv secretion Pathogen vacuole Small gtpase Amoeba Dictyostelium discoideum 
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