Outgrowth - OmicsDI

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Instrument Platform

Illumina NovaSeq 6000 (7)
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Illumina HiSeq 2000 (3)
NextSeq 500 (3)
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CHEBI ID

CHEBI:30769 (3)
CHEBI:32816 (3)
CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:15603 (2)
CHEBI:15727 (2)
CHEBI:15760 (2)
CHEBI:15891 (2)
CHEBI:16015 (2)
CHEBI:16040 (2)
CHEBI:16344 (2)
CHEBI:16347 (2)
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CHEBI:16977 (2)
CHEBI:17015 (2)
CHEBI:17053 (2)
CHEBI:17115 (2)
CHEBI:17191 (2)
CHEBI:17268 (2)
CHEBI:17295 (2)
CHEBI:17368 (2)
CHEBI:17895 (2)
CHEBI:18050 (2)
CHEBI:18132 (2)

Metabolite Name

Citric acid (2)
Histamine (2)
Phosphorylcholine (2)
Pyruvic acid (2)
1-Methylhistidine (1)
1-Oleoyl-PE (1)
2-Amino-4-hydroxypteridine (1)
2-Hydroxy-3-methylbutyric acid (1)
2-Methylaminoadenosine (1)
3-Methylhistidine (1)
3-Methylthiopropionate (1)
4,8,12,15,19-Docosapentaenoic acid (1)
5-Methyldeoxycytidine (1)
ADP (1)
Acetic acid (1)
Acetone (1)
Acetylcholine (1)
Acetylcysteine (1)
Adenine (1)
Adenosine monophosphate (1)
Adenosine triphosphate (1)
Alpha-Linolenic acid (1)
Anserine (1)
Arachidonic acid (1)
Aspartyl-alanine (1)
Beta-Alanine (1)
Calcitetrol (1)
Carnosine (1)
Chenodeoxycholic acid (1)
Cholic acid (1)

First Public Date

2026 (124)
2024 (105)
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2014 (93)
2023 (85)
2022 (69)
2020 (68)
2021 (61)
2019 (41)
2018 (40)
2017 (37)
2015 (25)
2016 (10)
2013 (10)

Modelling Approach

Ordinary differential equation model (1)

Study status

Not provided (2)
Not yet recruiting (1)
Ongoing (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (3)
1. Department I of Internal Medicine, Center for Integrated Oncology (CIO), Aachen-Bonn- Cologne-Duesseldorf, Excellence Cluster for Cellular Stress Response and Aging-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), University of Cologne (UoC), 50937 Cologne, Germany 2. Department of Hematology and Cellular Therapy, University of Leipzig, Leipzig, Germany (2)
Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany (2)
Leiden University Medical Centre (LUMC) (2)
Max-Delbrueck-Centre for Molecular Medicine (MDC), Berlin, Germany. (2)
St. Jude Children's Research Hospital (2)
1) Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute, Jena, Germany 2) Department of Microbiology and Molecular Biology, Friedrich Schiller University, Jena, Germany (1)
1. Center for Medical Biotechnology, VIB, Ghent, Belgium. 2. Department for Biomolecular Medicine, Ghent University, Ghent, Belgium 3. VIB Proteomics Core, VIB, Ghent, Belgium (1)
Baker Heart & Diabetes Inst. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biozentrum, Univresity of Basel, Switzerland (1)
Boston University (1)
Botnar Research Centre, Nuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences, Old Road, University of Oxford, Oxford OX3 7LD, UK (1)
CRUK Beatson Institute (1)
Cambridge Institute for Medical Research, Hills Road, Cambridge, CB2 0XY (1)
Cell Biology and Physiology, University of North Carolina at Chapel Hill, North Carolina, USA (1)
Centre de recherche du Centre Hospitalier Universitaire (CHU) de Quebec-Université Laval, Québec, QC, Canada Centre de recherche sur le cancer de l’Université Laval, Québec, QC, Canada PROTEO-Quebec Network for Research on Protein Function, Engineering, and Applications, Québec, QC, Canada Department of Molecular Biology, Medical Biochemistry and Pathology, Université Laval, Québec, QC, Canada (1)
Centro Cardiovascular da Universidade de Lisboa (CCUL@RISE), Faculdade de Medicina da Univer-sidade de Lisboa, Portugal (1)
Chemistry Department, University of Minnesota (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark (1)
Department of Bioengineering, Stanford University, Stanford, CA 94305, USA Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA Chan Zuckerberg Biohub, San Francisco, CA 94158 (1)
Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, South Korea KAIST Stem Cell Center, KAIST, Daejeon 34141, South Korea (1)
Department of Biomedical Engineering, Tufts University, United States (1)
Department of Biomedical Sciences, Faculty of Medicine and Health Sciences, Macquarie University, North Ryde, NSW, 2109, Australia (1)
Department of Experimental Oncology, IEO, European Institute of Oncology IRCCS, Milan 20139, Italy (1)
Department of Hematology, Erasmus MC, Rotterdam, the Netherlands (1)
Department of Immunology and Regenerative Biology and Department of Molecular Neuroscience, Weizmann Institute of Science, Rehovot 76100, Israel (1)

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bacteria (13)
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viruses (1)
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Modification

2x(15)N labeled L-lysine (1)
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Study type

Transcription profiling by array (220)
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RNA-seq of coding RNA from single cells (6)
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2002 (18)
2000 (10)
1998 (10)
1999 (9)
2001 (5)
1997 (5)

Location

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Germany (1)
Spain (1)

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Transcription profiling of mouse neurite outgrowth and regeneration (super series)

This SuperSeries is composed of the following subset Series:; GSE9738: Analysis of gene expression during neurite outgrowth and regeneration (430A and 420A 2.0 array); GSE9739: Analysis of gene expression during neurite outgrowth and regeneration (MG-U74A); GSE9740: Analysis of gene expression durin...

ORGANISM(S): Mus musculus

2008-04-10 | E-GEOD-9744 | biostudies-arrayexpress

Transcription profiling of mouse neurite outgrowth and regeneration

We have undertaken a genome-wide study of transcriptional activity in embryonic superior cervical ganglia (SCG) and dorsal root ganglia (DRG) during a time course of neurite outgrowth in vitro. Gene expression observed in these models likely includes both developmental gene expression patterns and ...

ORGANISM(S): Mus musculus

2008-06-16 | E-GEOD-9738 | biostudies-arrayexpress

Transcription profiling of mouse embryonic superior cervical ganglia (SCG) and dorsal root ganglia (DRG) during a time series of neurite outgrowth in vitro

ORGANISM(S): Mus musculus

2008-06-16 | E-GEOD-9739 | biostudies-arrayexpress

Transcription profiling of mouse embryonic superior cervical ganglia (SCG) and dorsal root ganglia (DRG) during a time series of neurite outgrowth in vitro

ORGANISM(S): Mus musculus

2008-06-16 | E-GEOD-9740 | biostudies-arrayexpress

Soluble SORLA enhances neurite outgrowth and regeneration through activation of EGFR and MAPK pathways

SORLA is a type I transmembrane component associated with Alzheimers disease (AD) risk. Although SORLA is abundantly expressed in neurons, physiological roles for SORLA remain yet unclear. Here, we show that cultured neurons overexpressing SORLA (SORLA TG) feature enhanced neurite length, and accele...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2020-05-12 | MSV000085400 | MassIVE

Herpes simplex virus type 1 modifies the protein composition of extracellular vesicles to promote neurite outgrowth and facilitate neuroinfection

Herpes simplex virus type 1 (HSV-1) is a highly contagious and prevalent human pathogen that causes many diseases, including encephalitis. During primary infection, HSV-1 infects epithelial cells and then neurites of peripheral neurons, establishing lifelong infection in the neuronal cell body. Neur...

ORGANISM(S): Homo sapiens (Human)

2024-01-06 | PXD039569 | Pride

Escherichia coli proteome during outgrowth from stationary phase

We studied the proteomic dynamics of Escherichia coli cells exiting stationary phase and identified unique dynamics for the proteins.

ORGANISM(S): Escherichia coli

2021-01-22 | PXD023729 | Pride

Outgrowth Escherichia coli Stationary phase

Static Magnetic Stimulation and Magnetic Microwires Synergistically Enhance and Guide Neurite Outgrowth.

Not available

S-EPMC11773108 | biostudies-literature

Tgfbr2 in dental pulp cells guides neurite outgrowth in developing teeth

Transforming growth factor (TGF) plays an important role in tooth morphogenesis and mineralization. During postnatal development, the dental pulp (DP) mesenchyme secretes neurotrophic factors that guide trigeminal nerve fibers into and throughout the DP. This process is tightly linked with dentin f...

ORGANISM(S): Mus musculus (Mouse)

2022-02-04 | PXD031046 | Pride

Dental pulp Neurotrophins Neurite outgrowth Tgfbeta signaling Trigeminal Tooth development Sensory innervation Semaphorins Tgfbeta

Growth cone localization of the mRNA encoding a chromatin regulator modulates neurite outgrowth

Neurons exploit local mRNA translation and retrograde transport of transcription factors to regulate gene expression in response to signaling events at distal neuronal ends. Whether epigenetic factors could also be involved in such regulation is not known. We report that the mRNA encoding the HMGN5 ...

ORGANISM(S): Mus musculus (Mouse)

2015-04-17 | PXD001070 | Pride

Hmgn5 Neuronal development Chromatin regulation

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