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ProteomicsCharacterization of Early-Phase Neutrophil Extracellular Traps in Urinary Tract Infections
Neutrophils have an important role in rapid antimicrobial defenses against and resolution of urinary tract infections (UTIs). We show that a mechanism known as neutrophil extracellular trap (NET) formation is a strategy to combat pathogens in the urinary tract. Viscous aggregates that were present i...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-31 | MSV000080847 | MassIVE
ModelsPepke2010_Full_Ca2/CaM_mCaMKII
This the full model from the article: A dynamic model of interactions of Ca2+, calmodulin, and catalytic subunits of Ca2+/calmodulin-dependent protein kinase II. Pepke S, Kinzer-Ursem T, Mihalas S, Kennedy MB. PLoS Comput Biol 2010 Feb 12;6(2):e1000675...
2005-01-01 | MODEL1001150000 | BioModels
ProteomicsLC-MS/MS analysis of hMPV F2 C-terminal peptides
Supernatant of epithelial cells infected with hMPV was analyzed using in-gel digestion and LC-MS/MS analysis to identify the C-terminus of F2 protein.
ORGANISM(S): Human metapneumovirus 
2024-07-25 | PXD049443 | Pride
Lc-ms F protein Hmpv 
ProteomicsProteomic Verification of Campylobacter jejuni in Chicken Meat Samples Using LC-MS/MS and Enzymatic Assay Correlation
This project presents LC-MS/MS-based proteomic datasets obtained from bacterial colonies isolated from retail chicken meat samples, as part of a study focused on the detection of Campylobacter jejuni. The isolates were initially screened using a novel chromogenic enzymatic assay targeting hippuricas...
ORGANISM(S): Campylobacter jejuni 
2025-09-02 | PXD063891 | Pride
Proteomics Hippuricase Bacterial identification Food safety Orbitrap Chromogenic assay Campylobacter jejuni Lc-ms/ms 
ProteomicsRegioselective Protein Oxidative Cleavage Enabled by an Enzyme-like Recognition of an Inorganic Metal Oxo Cluster Ligand
Metal-catalyzed oxidation reactions (MCO) is one of the most applicable methods to induce protein oxidative modifications (e.g., protein oxidation, protein oxidative cleavage and crosslinking), which are essential techniques for many applications in biotechnology and redox proteomics. However, a sui...
ORGANISM(S): Gallus gallus (Chicken) 
2023-01-30 | PXD037983 | Pride
Hen egg white lysosime Lc-ms/ms 
ProteomicsHuman platelet-derived extracellular vesicle proteome
The effect of size exclusion chromatography on the proteome of human platelet-derived extracellular vesicles was investigated.
ORGANISM(S): Homo sapiens (Human) 
2022-02-17 | PXD024760 | Pride
Ev Timstof Sec 
ProteomicsPTMs of HTT protein - Post-translational modifications (PTMs), identified on endogenous huntingtin, cluster within proteolytic domains between HEAT repeats
Post-translational modifications (PTMs) of proteins regulate various cellular processes. PTMs of polyglutamine-expanded huntingtin (Htt) protein, causative of Huntington’s disease (HD), are likely modulators of HD pathogenesis. Previous studies have identified and characterized several PTMs on exo...
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2017-06-29 | PXD005753 | Pride
Huntingtin Hd Human and mouse brain 
ProteomicsA comparative proteomic, transcriptomic and glycomic analysis of extracellular vesicle isolation techniques highlights ExoGAG efficiency for a more complete identification of breast milk molecular signaling pathways
Background: Human milk (HM) is the earliest form of extrauterine communication between mother and infant. We recently showed a functional characterization of HM, unmasking the molecular mechanisms related to EV signaling and its functional role in prematurity. In that study, we identified the need t...
ORGANISM(S): Homo sapiens (Human) 
2025-10-13 | PXD060683 | Pride
Glycomics. Proteomics Extracellular vesicles Human milk Transcriptomics Isolation method 
ProteomicsBovine colostrum-derived extracellular vesicles impair cancer cell proliferation through transcriptional repression.
Milk-derived extracellular vesicles (EVs) are a promising source of molecules with therapeutic potential. Bovine colostrum is particularly enriched in EVs, which carry a unique cargo of proteins involved in immune regulation, development, and cellular signaling. However, despite promising bioactive ...
ORGANISM(S): Homo sapiens (Human) 
2026-09-10 | PXD066009 | Pride
Bovine colostrum Cell growth arrest Extracellular vesicles Chromatin remodeling Gastrointestinal cancer Transcriptional repression Proteomics. 
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