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ProteomicsZebrafish embryo gene and protein expression comparison
Sensitivity and throughput of transcriptomics and proteomomics technologies have advanced tremendously in recent years. With the use of deep sequencing of RNA samples (RNAseq) and mass spectrometry technology for protein identification and quantitation, it is now feasible to compare gene and protein...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2016-06-09 | PXD000145 | Pride
Embryos Zebrafish 
ProteomicsData for demonstrating new features in compareMS2 2.0
This submission contains datasets from several species used to demonstrate new features in compareMS2 2.0. Tandem mass spectrometry data from California sea lion, chimpanzee, dog, human, rock hyrax, and white-tailed deer sera were graciously provided with permission from an ongoing collaboration wi...
ORGANISM(S): Canis lupus familiaris Pan troglodytes (Chimpanzee) Procavia capensis Homo sapiens (Human) Escherichia coli Odocoileus virginianus Zalophus californianus 
2022-10-06 | PXD034932 | Pride
Serum Molecular phylogenetics 
ProteomicsABRF iPRG2020 Metaproteomics Study Data
Replicate metaproteomic datasets containing four bacterial species and one bacteriophage.
ORGANISM(S): Escherichia phage T4 Salmonella enterica Escherichia coli Bacteria Bacillus subtilis 
2024-01-26 | PXD034795 | Pride
Iprg2020 Phage Bacteriophage Bacteria Abrf Iprg Metaproteomics 
ProteomicsEvaluation of Olink Reveal Proximity Extension Assay for High-Throughput Proteomics: A Case Study Using NIST SRM 1950 and Spike-In Protein Standards
Plasma proteomics has regained attention in recent years through advancements in mass spectrometry instrumentation and sample preparation, as well as new high-throughput affinity-based technologies. Here, we evaluate the analytical performance of the new Olink Reveal platform, a proximity extension ...
ORGANISM(S): Homo sapiens (Human) 
2025-06-03 | PAD000009 | Pride
Affinity proteomics Plasma Olink reveal 
UnknownCross-Sectional and Longitudinal Immunoprofiling of Oligoarticular Juvenile Idiopathic Arthritis Reveals Different Patterns in Synovial Fluid and Plasma.
Not available
S-EPMC12475091 | biostudies-literature
UnknownImmunoprofiling of active and inactive systemic juvenile idiopathic arthritis reveals distinct biomarkers: a single-center study.
Not available
S-EPMC8713412 | biostudies-literature
ProteomicsA protein standard that emulates homology for the characterization of protein inference algorithms
A natural way to benchmark the performance of an analytical experimental setup is to use samples of known content, and see to what degree one can correctly infer the content of such a sample from the data. For shotgun proteomics, one of the inherent problems of interpreting data is that the measured...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) 
MSV000084315 | MassIVE
ProteomicsIPRG2015
IPRG-2015 Study -Differential Abundance Analysis in Label-Free Quantitative Proteomics. This study of LC-MS/MS data analysis focuses on data processing and statistical assessment for relative protein-level quantification in label-free proteomics.
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2016-06-20 | MSV000079843 | MassIVE
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