Pearson S S - OmicsDI

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Unknown (4502)
Proteomics (245)
Transcriptomics (236)
Genomics (102)
Metabolomics (91)
Genomic (2)
Clinical (1)
Other (1)

Organisms

Homo sapiens (283)
Mus musculus (102)
Rattus norvegicus (13)
Saccharomyces cerevisiae (6)
Schizosaccharomyces pombe (6)
Daphnia pulex (5)
Sus scrofa (5)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
Tetrahymena thermophila (3)
Shewanella oneidensis MR-1 (3)
Schmidtea mediterranea (3)
Oncorhynchus mykiss (3)
Euglena gracilis (2)
Macaca mulatta (2)
Xylella fastidiosa (2)
Apis mellifera (2)
Campylobacter jejuni (2)
Bos taurus (2)
Oryza sativa Japonica Group (2)
Danio rerio (2)
Babesia divergens (1)
Peromyscus leucopus (1)
Puccinia graminis f. sp. tritici (1)
Thermotoga maritima MSB8 (1)
Camponotus floridanus (1)
Proteus mirabilis HI4320 (1)
Ictalurus punctatus (1)
Viruses (1)
Pinus pinaster (1)
Culex quinquefasciatus (1)

Organisms

Homo sapiens (10)
Tetrahymena thermophila (2)
Schmidtea mediterranea (2)
Staphylococcus aureus subsp. aureus MSSA476 (1)
Scophthalmus maximus (1)
Agrobacterium fabrum (1)
Schizosaccharomyces pombe 972h- (1)
Schizosaccharomyces pombe (1)
Rattus norvegicus (1)
Plasmodium falciparum (1)
Saccharomyces cerevisiae (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (243)
pride (221)
MetaboLights (91)
EGA (65)
ENA (29)
PeptideAtlas (10)
geo (9)
MassIVE (3)
PanoramaPublic (3)
dbGaP (2)
iProX (2)
PAXDB (1)

Tissue

Cell culture (34)
Epithelial cell (20)
Brain (17)
Leaf (11)
Permanent cell line cell (11)
Heart (9)
Plant cell (8)
Lung (7)
Blood plasma (6)
Colon (6)
Liver (5)
Saliva (5)
Cell suspension culture (4)
Cerebrospinal fluid (4)
Erythroblast (4)
Umbilical cord blood cell (4)
B cell (3)
Blood cell (3)
Blood serum (3)
Early embryonic cell (3)
Embryo (3)
Macrophage (3)
Mesenchymal cell (3)
Skin (3)
Stem cell (3)
T cell (3)
Blood (2)
Bone marrow (2)
Cell line cell (2)
Colonic mucosa (2)

Disease

Disease free (6)
Breast cancer (5)
Cardiovascular system disease (5)
Alzheimer's disease (4)
Colon cancer (4)
Acute leukemia (3)
Inflammatory bowel disease (3)
Influenza (3)
HHV-6B infected (2)
COVID-19 (2)
Melanoma (2)
Non-small cell lung carcinoma (2)
Periodontitis (2)
Prostate adenocarcinoma (2)
Prostate cancer (2)
Burn injury (1)
Pilocytic astrocytoma (1)
Prostate carcinoma (1)
Breast carcinoma (1)
Cancer-Bowel-Back passage (rectum) or large bowel (colon) (1)
Age related macular degeneration (1)
Amyotrophic lateral sclerosis (1)
Atopic dermatitis (1)
Breast ductal carcinoma (1)
Cardiomyopathy (1)
Cataract (1)
Celiac disease (1)
Cervix carcinoma (1)
Eczema (1)
Human immunodeficiency virus infectious disease (1)

Technology Type

Mass Spectrometry (221)
Shotgun proteomics (133)
Mass spectrometry (57)
Bottom-up proteomics (49)
Data-independent acquisition (28)
Mass spectrometry assay (25)
Data-dependent acquisition (25)
Affinity purification coupled with mass spectrometry proteomics (12)
Gel-based experiment (12)
SWATH MS (10)
NMR spectroscopy (7)
Top-down proteomics (5)
HDMSE (4)
SRM/MRM (4)
NMR spectroscopy assay (2)
Affinity proteomics (2)
DiaPASEF (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Metaproteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (31)
Liquid Chromatography MS - negative - reverse phase (29)
Liquid Chromatography MS - negative - reverse-phase (16)
Liquid Chromatography MS - positive - reverse-phase (15)
Liquid Chromatography MS - positive - hilic (12)
Liquid Chromatography MS - negative - hilic (11)
Nuclear Magnetic Resonance (NMR) - (6)
NextSeq 2000 (4)
Liquid Chromatography MS - alternating - reverse phase (4)
Illumina HiSeq 2500 (3)
Q Exactive (3)
Liquid Chromatography MS - alternating - hilic (3)
Liquid Chromatography MS - negative - HILIC (3)
Liquid Chromatography MS - positive - HILIC (3)
NextSeq 550 (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
NextSeq 500 (2)
Bruker (2)
Direct infusion MS - positive (2)
Gas Chromatography MS - (2)
Fluidigm C1 (1)
Linux computer (1)
Linux Beowulf cluster; AMD Opteron Linux Beowulf cluster; AMD Opteron 6168 (1)
FUJIFILM BAS-5000 scanning hardware (1)
Axon GenePix 4000B scanning hardware (1)
BGISEQ-500 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Elite (1)
TripleTOF 5600 (1)

Publication Date

2026 (60)
2025 (50)
2021 (42)
2010 (42)
2022 (40)
2024 (38)
2013 (36)
2015 (32)
2008 (29)
2011 (27)
2023 (26)
2020 (25)
2014 (25)
2016 (22)
2019 (20)
2012 (16)
2018 (14)
2009 (14)
2007 (10)
2017 (9)
2005 (2)
2006 (1)
2004 (1)

UNIPROT ID/AC

1433E_HUMAN (1)
4EBP1_HUMAN (1)
4F2_HUMAN (1)
5NTC_HUMAN (1)
8ODP_HUMAN (1)
9606.ENSP00000291295 (1)
9606.ENSP00000331127 (1)
9606.ENSP00000349467 (1)
9606.ENSP00000353600 (1)
9606.ENSP00000366679 (1)
9606.ENSP00000376250 (1)
9606.ENSP00000378570 (1)
9606.ENSP00000382982 (1)
9606.ENSP00000383938 (1)
9606.ENSP00000406577 (1)
A0A087WVV2_HUMAN (1)
A0A0A0MSP3_HUMAN (1)
A0A0A6YYG9_HUMAN (1)
A0A0B4J299_HUMAN (1)
A6PVM9_HUMAN (1)
ABCE1_HUMAN (1)
ABCF2_HUMAN (1)
ABCF3_HUMAN (1)
ABHEB_HUMAN (1)
ACBD7_HUMAN (1)
ACL6A_HUMAN (1)
ACLY_HUMAN (1)
ACO13_HUMAN (1)
ACOC_HUMAN (1)
ACON_HUMAN (1)

CHEBI ID

CHEBI:18237 (17)
CHEBI:28044 (17)
CHEBI:16704 (16)
CHEBI:30769 (16)
CHEBI:15891 (15)
CHEBI:17596 (15)
CHEBI:17992 (15)
CHEBI:18186 (15)
CHEBI:22660 (15)
CHEBI:28300 (15)
CHEBI:15428 (14)
CHEBI:15741 (14)
CHEBI:16811 (14)
CHEBI:25094 (14)
CHEBI:27266 (14)
CHEBI:27897 (14)
CHEBI:29016 (14)
CHEBI:16335 (13)
CHEBI:16449 (13)
CHEBI:16708 (13)
CHEBI:17368 (13)
CHEBI:17822 (13)
CHEBI:18257 (13)
CHEBI:24898 (13)
CHEBI:26986 (13)
CHEBI:30746 (13)
CHEBI:30915 (13)
CHEBI:32816 (13)
CHEBI:16027 (12)
CHEBI:16737 (12)

Metabolite Name

L-Lysine (18)
L-Leucine (17)
Adenosine (16)
Choline (16)
L-Histidine (16)
L-Phenylalanine (16)
L-Valine (15)
Creatine (14)
Indole (14)
L-Methionine (14)
L-Proline (14)
L-Threonine (14)
L-Tryptophan (14)
4-Hydroxybenzaldehyde (13)
Creatinine (13)
Inosine (13)
L-Glutamine (13)
L-Isoleucine (13)
L-Tyrosine (13)
Lumichrome (13)
Uracil (13)
Adenine (12)
Cytosine (12)
Hypoxanthine (12)
L-Arginine (12)
L-Asparagine (12)
L-Serine (12)
Pyridoxine (12)
Riboflavin (12)
Sucrose (12)

First Public Date

2014 (14)
2024 (3)
2016 (3)
2026 (2)
2023 (2)
2022 (1)
2020 (1)
2019 (1)
2018 (1)
2013 (1)

Classification

protozoa (1)
bacteria (1)

Modification

N6 (3)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
N6-dimethyl-L-lysine (1)

Study status

Terminated (1)

Study type

Transcription profiling by array (171)
RNA-seq of coding RNA (25)
Unknown experiment type (7)
ChIP-seq (7)
Comparative genomic hybridization by array (6)
Proteomic profiling by array (5)
Methylation profiling by array (4)
ChIP-chip by tiling array (3)
RNA-seq of coding RNA from single cells (3)
High-throughput sequencing (2)
Transcription profiling by tiling array (2)
Translation profiling (1)
Animal - High-throughput sequencing (1)
Genotyping by array (1)
Other (1)
CUT&RUN (1)
RNA-seq of non coding RNA (1)
Observational (1)

Release Date

2025 (616)
2022 (596)
2023 (524)
2024 (515)
2021 (490)
2020 (400)
2019 (250)
2018 (213)
2017 (156)
2016 (146)
2015 (134)
2014 (130)
2013 (100)
2011 (89)
2026 (83)
2010 (79)
2012 (78)
2009 (47)
2008 (47)
2007 (29)
2005 (6)
2002 (5)
2004 (4)
2006 (3)
2001 (2)
2003 (1)
1999 (1)
1998 (1)

Lab affiliation

Administrerende Direktør • Novo Nordisk Foundation Center for Protein Research (5)
Institute of Plant Genetics, Leibniz Universitaet Hannover, Germany (4)
University of Alabama at Birmingham, O'Neal Mass Spectrometry Proteomics Shared Facility (4)
Hudson Institute of Medical Research Department of Molecular and Translational Science, Monash University Faculty of Medicine, Nursing and Health Sciences 27-31 Wright Street, Clayton VIC 3168, AUSTRALIA (3)
Inserm, U1016, Institut Cochin, Paris, France Cnrs, UMR8104, Paris, France Plateforme Proteomique 3P5, Université Paris Descartes, Sorbonne Paris Cité, France. (3)
Boston University Medical Campus 670 Albany St., Rm. 509 Boston, MA 02118 USA (2)
Centre for Innate Immunity and Infectious diseases, Hudson Institute of Medical Research, Clayton 3168, Australia (2)
DZNE Munich / TU Munich (2)
Department of Molecular Microbiology, Washington University School of Medicine, St Louis, MO 63110, USA. (2)
Department of Molecular and Cellular Biology, University of Guelph, 50 Stone Rd. E., Guelph, Ontario, Canada, N1G 2W1 (2)
Executive Director, Professor Novo Nordisk Foundation Center for Protein Research Proteomics Program (2)
Helmholtz Zentrum München, Institute of Lung Biology and Disease, Group Systems Medicine of Chronic Lung Disease, Member of the German Center for Lung Research (DZL), Munich, Germany (2)
Institute of Plant Sciences Faculty of Agriculture The Hebrew University of Jerusalem Rehovot 76100 ISRAEL (2)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (2)
The University of Melbourne (2)
1 School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia. 2 Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia (1)
1.Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec, Canada 2.Gerald Bronfman Department of Oncology, Jewish General Hospital, McGill University, Montreal, Quebec (1)
1Dept. of Pharmacology and Toxicology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR 72205 2Dept. of Environmental and Occupational Health, Fay W. Boozman College of Public Health, University of Arkansas for Medical Sciences, Little Rock, AR 72205 (1)
1、Capital Institute of Pediatrics,Chinese Academy of Medical Sciences & Peking Union Medical College 2、Beijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics (1)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (1)
Aalborg University, Section for Biotechnology, Department of Chemistry and Bioscience, Denmark (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Assistant Professor, Department of Food Science and Technology, Texas A&M University, College Station, TX 77843, USA (1)
AstraZeneca (1)
Babraham Institute, UK (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Basilbiotech, Incheon 22002, Republic of Korea. (1)
Biochemistry, Baylor College of Medicine (1)
Biomedical Research Institute of New Jersey (BRInj) 140 East Hanover Ave Cedar Knolls New Jersey 07927 (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht Netherlands Proteomics Center (1)

Location

Australia (1)

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growth dependent expression of s. aureus mssa476

Survival and pathogenesis of Staphylococcus aureus in the host requires the ability to respond to changes. Therefore, tight regulation of gene expression via various regulators is essential. Also, the organization of genes in operons is of influence on the regulation of gene expression. Knowledge o...

ORGANISM(S): Staphylococcus aureus subsp. aureus MSSA476

2010-06-24 | E-GEOD-16488 | biostudies-arrayexpress

Diagnostic metabolite biomarkers of chronic typhoid carriage

Background: Salmonella Typhi and Salmonella Paratyphi A are the agents of enteric (typhoid) fever; both can establish chronic carriage in the gallbladder. Chronic Salmonella carriers are typically asymptomatic, intermittently shedding bacteria in the feces, and contributing to disease transmission. ...

2018-01-17 | MTBLS579 | MetaboLights

A multicentre validation study of the Swedish version of the Normalization Process Theory Measure S-NoMAD.

Not available

S-EPMC12838009 | biostudies-literature

S. islandicus REY15A pH/Temp stress

diDO-IPTL quantitative analysis (Waldbauer et al. 2017 Anal. Chem.) of pH- and temperature-stress during mid-log and early-stationary phase growth of S. islandicus REY15A

ORGANISM(S): Sulfolobus Islandicus Rey15a (ncbitaxon:930945)

2022-10-21 | MSV000090562 | MassIVE

Expression data from fission yeast Schizosaccharomyces pombe under nitrosative stress

Nitric oxide being a versatile molecule inside biological systems, from being both a cell signaling molecule to a potent stress agent, has significant effect in the transcriptional response in fission yeast. We have used fission yeast microarrays to identify cellular targets of Nitric Oxide (NO) and...

ORGANISM(S): Schizosaccharomyces pombe

2015-01-30 | E-GEOD-50899 | biostudies-arrayexpress

Transcription profiling of S. aureus isolates from different locations and associated with different diseases

Hybridisation of reference strains to the VirEp Staphylococcus aureus microarray, and characterisation of different S. aureus isolates from different locations and associated with different diseases.

ORGANISM(S): Staphylococcus aureus

2008-05-01 | E-MEXP-1548 | biostudies-arrayexpress

growth dependent expression of s. aureus mssa476

ORGANISM(S): Staphylococcus aureus subsp. aureus MSSA476

2010-01-25 | GSE16488 | GEO

SARS-CoV-2 Envelope TurboID LFQ using internal tagging

SARS-CoV-2 is the causative agent of the Covid-19 pandemic. Here we investigated the cell biology of the SARS-CoV-2 protein Envelope (E). Envelope is a transmembrane protein that oligomerises to form a pentameric cation channel and is essential for high viral titres. One of SARS-CoV-2's four structu...

ORGANISM(S): Homo sapiens (Human)

2024-02-27 | PXD045299 | Pride

Misophonia in the UK: Prevalence and norms from the S-Five in a UK representative sample.

Not available

S-EPMC10032546 | biostudies-literature

Correlation between tissue Doppler-derived left ventricular systolic velocity (S') and left ventricle ejection fraction in sepsis and septic shock: a retrospective cohort study.

Not available

S-EPMC10316553 | biostudies-literature

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5182 Results

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