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UnknownN-Terminal Peptide Detection with Optimized Peptide-Spectrum Matching and Streamlined Sequence Libraries.
Not available
S-EPMC7379158 | biostudies-literature
ProteomicsHuman serum glycoproteome - Glyco-Decipher
Identification results of peptide-spectrum matches supporting Glyco-Decipher manuscript (Glyco-Decipher: Glycan database-independent peptide matching enables discovery of new glycans and in-depth characterization of site-specific N-glycosylation). Recently, several elegant bioinformatics tools have ...
ORGANISM(S): Homo Sapiens 
PXD045630 |
UnknownAIRPred: A Deep Learning Model Predictor for Peptide Intensity Ratios in Cross-Linking Mass Spectrometry Improves Cross-Link Spectrum Matching.
Not available
S-EPMC12658862 | biostudies-literature
UnknownSubmodular Generalized Matching for Peptide Identification in Tandem Mass Spectrometry.
Not available
S-EPMC8641787 | biostudies-literature
OtherJUMP: a tag-based database search tool for peptide identification with high sensitivity and accuracy.
Data from authors [[http://stjuderesearch.org/site/lab/peng web site]]. Experiment: dataset3, file: pl08.mzXML. Published as part of Mol Cell Proteomics. 2014 Sep 8 . From the Abstract: {{i}} ... Here we present JUMP, a new hybrid database search program that generates amino acid tags and ranks pep...
ORGANISM(S): Homo_sapiens_viruses, Human 
GPM32320003491 | GPMDB
ProteomicsA systematic evaluation of semispecific peptide search parameter enables identification of previously undescribed N-terminal peptides and conserved proteolytic processing in cancer cell lines
Background: Liquid chromatography- tandem mass spectrometry (LC-MS/MS) has become the most commonly used technique in explorative proteomic research. A variety of open-source tools for peptide-spectrum matching have become available. Most analyses of explorative MS data are performed using conventio...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) 
2021-03-11 | MSV000087034 | MassIVE
ProteomicsRe-analysis of glycoproteomics data with Glyco-Decipher
Reanalysis of submissions PXD005411, PXD005413, PXD005412, PXD005553, PXD005555, PXD005565 and PXD019937 using Glyco-Decipher. Identification results of peptide-spectrum matches supporting Glyco-Decipher manuscript (Glyco-Decipher: glycan database-independent peptide matching enables discovery of ne...
ORGANISM(S): Mus musculus (Mouse) Saccharomyces cerevisiae (Baker's yeast) 
2022-03-04 | PXD031032 | Pride
Glycoproteomics  glycopeptide  reanalysis  glycosylation  n-glycosylation 
ProteomicsHuman serum glycoproteome - Glyco-Decipher
Identification results of peptide-spectrum matches supporting Glyco-Decipher manuscript (Glyco-Decipher: Glycan database-independent peptide matching enables discovery of new glycans and in-depth characterization of site-specific N-glycosylation). Recently, several elegant bioinformatics tools have ...
ORGANISM(S): Homo sapiens (Human) 
2022-03-04 | PXD031025 | Pride
Glycoproteomics  glycopeptide  glycosylation  n-glycosylation 
Unknownpepgrep: A tool for peptide MS/MS pattern matching.
Not available
S-EPMC4357823 | biostudies-literature
UnknownGlyco-Decipher enables glycan database-independent peptide matching and in-depth characterization of site-specific N-glycosylation.
Not available
S-EPMC8990002 | biostudies-literature
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