Peptideatlas - OmicsDI

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Proteomics (2466)
Multiomics (145)
Unknown (54)
Other (41)
Transcriptomics (1)
Genomics (1)

Organisms

Homo sapiens (1203)
Halobacterium salinarum NRC-1 (88)
Caenorhabditis elegans (60)
Drosophila melanogaster (51)
Aerococcus urinae NBRC 15544 = CCUG 36881 (36)
Andropogon gerardi (36)
Bacteria (36)
Bartonella quintana JK 31 (36)
Canis lupus familiaris (36)
Cnidaria (36)
Ectopseudomonas oleovorans CECT 5344 (36)
Ensifer adhaerens (36)
Globicatella sanguinis (36)
Halictus scabiosae (36)
Human immunodeficiency virus 1 (36)
Mesocricetus auratus (36)
Methylohalobius crimeensis 10Ki (36)
Miscanthus x giganteus (36)
Mus musculus (36)
Panicum virgatum (36)
Pseudomonas aeruginosa SJTD-1 (36)
Rabies virus Nishigahara RCEH (36)
Rattus norvegicus (36)
Rattus rattus (36)
Fusarium sinicum (18)
Saccharomyces cerevisiae (12)
Danio rerio (4)
Escherichia coli (1)
Mus musculus (1)
Labeo rohita (1)

Organisms

Homo sapiens (1)

Repository

PeptideAtlas (2294)
PAXDB (68)
MassIVE (66)
GPMDB (41)
pride (36)
biostudies-arrayexpress (1)
iProX (1)
PanoramaPublic (1)
ENA (1)

Tissue

Others (610)
Plasma Non-glyco (171)
Digestive System (116)
Liver (79)
Breast (75)
Brain (36)
Female Reproductive System (19)
Kidney (17)
Male Reproductive System (16)
Urine (15)
Blood plasma (9)
Lung (8)
Cell culture (8)
Heart (7)
Eye (6)
Large Intestine (6)
Liver (5)
Lung (5)
Adrenal Gland (4)
Pancreas (4)
Platelet (4)
Brain (4)
Heart (4)
Kidney (4)
Ovary (3)
Spleen (3)
Macrophage (3)
Skin (3)
Urinary Bladder (2)
Prefrontal Cortex (1)

Disease

Not Available (41)
Breast Carcinoma (36)
Colorectal Carcinoma (5)
Non-small Cell Lung Carcinoma (2)
Serous Cystadenocarcinoma (2)
Breast cancer (2)
COVID-19 (2)
Human immunodeficiency virus infectious disease (2)
Prostate adenocarcinoma (2)
Alzheimer's Disease (1)
High Grade Ovarian Serous Adenocarcinoma (1)
Amyotrophic lateral sclerosis (1)
Disease free (1)
Endocervical adenocarcinoma (1)
Melanoma (1)
Mitochondrial metabolism disease (1)
Non-alcoholic steatohepatitis (1)
Non-small cell lung carcinoma (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (17)
Bottom-up proteomics (8)
Data-dependent acquisition (8)
SRM/MRM (6)
SWATH MS (4)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

LTQ (400)
LTQ Orbitrap Velos (369)
QSTAR XL (248)
QSTAR Elite (196)
LTQ Orbitrap XL (139)
LTQ Orbitrap Elite (128)
QExactive (119)
Unknown (118)
LTQ Orbitrap (117)
TripleTOF 5600 (76)
LTQ FT (71)
LCQ DECA XP (70)
LCQ Classic (62)
LCQ DECA (57)
Instrument (41)
ABI QSTAR (33)
Agilent Q-ToF (16)
LCQ DECA XP PLUS (15)
LTQ Velos (13)
LCQ Duo (9)
Micromass Q-ToF (8)
ABI 6500 QTOF (7)
ABI 4800 (6)
Bruker Esquire (4)
BrukerDaltonics amaZon ion trap (4)
Orbitrap Fusion Lumos (3)
Orbitrap Exploris 480 (1)
Q Exactive (1)
TimsTOF Pro 2 (1)
TripleTOF 6600 (1)

Publication Date

2014 (422)
2013 (197)
2015 (186)
2011 (65)
2012 (55)
2020 (38)
2008 (24)
2006 (24)
2009 (18)
2016 (16)
2017 (14)
2021 (12)
2010 (9)
2019 (8)
2025 (8)
2004 (7)
2023 (5)
2022 (5)
2005 (5)
2007 (4)
2018 (3)
2026 (3)
2024 (3)
2003 (2)
2002 (1)
2001 (1)

UNIPROT ID/AC

1433B_HUMAN (18)
1433E_HUMAN (18)
1433F_HUMAN (18)
1433G_HUMAN (18)
1433S_HUMAN (18)
1433T_HUMAN (18)
1433Z_HUMAN (18)
9606.ENSP00000291295 (18)
9606.ENSP00000322421 (18)
9606.ENSP00000347168 (18)
9606.ENSP00000348924 (18)
9606.ENSP00000349467 (18)
9606.ENSP00000352119 (18)
9606.ENSP00000352627 (18)
9606.ENSP00000364802 (18)
9606.ENSP00000366679 (18)
9606.ENSP00000366956 (18)
9606.ENSP00000366962 (18)
9606.ENSP00000366974 (18)
9606.ENSP00000367034 (18)
9606.ENSP00000382982 (18)
9606.ENSP00000415840 (18)
9606.ENSP00000443017 (18)
9606.ENSP00000445633 (18)
9606.ENSP00000450540 (18)
9606.ENSP00000462355 (18)
9606.ENSP00000462667 (18)
9606.ENSP00000464265 (18)
9606.ENSP00000475814 (18)
9606.ENSP00000479106 (18)

ENSEMBL ID

ENSG00000170477 (899)
ENSG00000229353 (348)
ENSG00000147251 (261)
ENSG00000247315 (188)
ENSG00000204131 (104)
ENSBTAG00000006045 (71)
ENSBTAG00000012586 (68)
ENSBTAG00000033217 (59)
ENSMUSP00000141097 (59)
ENSBTAG00000020527 (57)
ENSBTAG00000001601 (56)
ENSBTAG00000003758 (56)
ENSBTAG00000010799 (51)
ENSECAG00000004960 (51)
ENSECAG00000009556 (51)
ENSECAG00000014414 (51)
ENSECAG00000021580 (51)
ENSECAG00000001810 (50)
ENSECAG00000004973 (50)
ENSECAG00000011847 (50)
ENSECAG00000019927 (50)
ENSECAG00000021499 (50)
ENSECAP00000007368 (50)
ENSECAP00000013223 (50)
ENSECAG00000006095 (49)
ENSECAG00000009752 (49)
ENSECAG00000014858 (49)
ENSECAP00000003495 (49)
ENSBTAG00000002507 (48)
ENSECAG00000000207 (48)

First Public Date

2025 (1)

Study type

Transcription profiling by array (1)

Release Date

2020 (6)
2017 (6)
2014 (5)
2025 (4)
2023 (4)
2022 (4)
2016 (4)
2015 (4)
2024 (3)
2018 (3)
2012 (2)
2021 (2)
2019 (2)
2013 (2)
2026 (1)
2011 (1)
2010 (1)
2008 (1)

Lab affiliation

Institute for Systems Biology, Seattle, WA, USA (3)
Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3BX, United Kingdom (3)
Institute for Systems Biology (2)
1Department of Pathology, Johns Hopkins University, Baltimore, Maryland 21287, USA (1)
Biochemistry & Systems Biology, Universiy of Liverpool, UK (1)
Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Carrer Dr. Aiguader 88, Barcelona 08003, Spain. (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (1)
Computational Biology Division, Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa. (1)
Department of Biochemistry and Molecular Biology Bio21 Molecular Science & Biotechnology Institute and The University of Melbourne 30 Flemington Road, Parkville VIC 3052 Australia (1)
Department of Biochemistry and Molecular Biology; University of Southern Denmark; Odense; 5230; Denmark (1)
Department of Medical Biochemistry, Medical University of Lodz, 92-215 Lodz, Poland (1)
Department of Molecular Biology and Genetics, Aarhus University, Denmark. (1)
Department of Neurology, University of Sao Paulo, School of Medicine (1)
Department of Pathology, Johns Hopkins University, Baltimore, Maryland 21287 (1)
Department of biosciences and Bioengineering, IIT Bombay (1)
Dept of Chemcial & Systems Biology, Stanford University, Stanford CA 94305 (1)
Environmental Toxicology Graduate Program and Department of Chemistry, University of California, Riverside, California 92521, United States (1)
Institut National de la Santé et de la Recherche Médicale (INSERM), U1297, Institute of Cardiovascular and Metabolic Disease, 31432 Toulouse, France Université Toulouse III Paul-Sabatier, 31062 Toulouse, France. (1)
Institute for Systems Biology, Seattle, WA, US (1)
Instituto de Investiaciones Sanitarias de Santiago de Compostela (1)
Integrated PharmacoMetrics, pharmacoGenomics and pharmacoKinetics (PMGK) research group Louvain Drug Research Institute (LDRI) Université catholique de Louvain Avenue Emmanuel Mounier 72, B1.72.02 1200 Brussels; Belgium (1)
Key Laboratory for Food Microbial Technology of Zhejiang Province, School of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou 310018, China (1)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Université de Strasbourg, CNRS, Strasbourg, France (1)
Laboratory for Medical Massspectroemtry (1)
Ping Xu, Ph.D. Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， 38 Life Science Park Road, Beijing 102206, P.R. China. Tel: 0086-10-61777113, Fax: 0086-10-61777060 (1)
Principal investigator at Lund University (1)
Proteome Center Tuebingen Interfaculty Institute for Cell Biology Auf der Morgenstelle 15 72076 Tuebingen Germany (1)
Turku Centre for Biotechnology, University of Turku and Åbo Akademi University, Finland (1)
University of Michigan, Ann Arbor, MI, US (1)
University of Washington, Department of Genome Sciences (1)

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Borrelia PeptideAtlas: A proteome resource of common Borrelia burgdorferi isolates for Lyme community

Lyme disease is a result from an infection by the spirochete Borrelia burgdorferi, and is the leading vector-borne disease in North America. Due to the genomic and proteomic variability of different B. burgdorferi isolates, the study and further comparison of their proteome is key to understand the...

ORGANISM(S): Borrelia sp. tAG21

2025-05-06 | PXD042072 | Pride

Borrelia PeptideAtlas: A proteome resource of common Borrelia burgdorferi isolates for Lyme community

ORGANISM(S): Borreliella burgdorferi

2024-09-03 | PXD046281 | Pride

Borrelia burgdorferi Proteomics Mass spectrometry

DDA data of Felis Catus immortalized cells, tissues and plasma

We report a mass spectrometry-based proteomics approach to advance the study of the feline proteome. We analyzed immortalized feline cells, various tissues and plasma using data-dependent acquisition (DDA) on a Q Exactive HF mass spectrometer to develop a Felis Catus PeptideAtlas from 157 acquired r...

ORGANISM(S): Felis catus (Cat) (Felis silvestris catus)

2026-07-07 | PXD075481 | Pride

Feline cell lines Tissues Plasma Peptideatlas Data-dependent acquisition Felis catus cat proteome

The state of the human proteome in 2012 as viewed through PeptideAtlas.

Not available

S-EPMC3928036 | biostudies-literature

A comprehensive Candida albicans PeptideAtlas build enables deep proteome coverage.

Not available

S-EPMC4670622 | biostudies-literature

The PeptideAtlas of the Domestic Laying Hen.

Not available

S-EPMC5877420 | biostudies-literature

The Equine PeptideAtlas: a resource for developing proteomics-based veterinary research.

Not available

S-EPMC4340707 | biostudies-literature

A Labrador PeptideAtlas - resource for proteomics research in dogs

The domestic dog, Canis lupus familiaris, plays a vital role as companion or service animal, and the well-being and healthy aging of dogs is gaining importance. Proteins are key actors in cells, tissues and body fluids, and the ability to measure their composition and abundance is crucial to underst...

ORGANISM(S): Canis familiaris (Dog) (Canis lupus familiaris)

2025-12-16 | PXD052932 | Pride

Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics.

Not available

S-EPMC4331073 | biostudies-literature

The Pig PeptideAtlas: A resource for systems biology in animal production and biomedicine.

Not available

S-EPMC4786621 | biostudies-literature

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2563 Results

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Organisms

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