Pig brain - OmicsDI

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Unknown (412)
Transcriptomics (119)
Genomics (62)
Proteomics (38)
Metabolomics (4)
Methylation profiling (2)

Organisms

Sus scrofa (55)
Mus musculus (38)
Andropogon gerardi (28)
Bacteria (28)
Bartonella quintana JK 31 (28)
Canis lupus familiaris (28)
Cnidaria (28)
Ensifer adhaerens (28)
Halictus scabiosae (28)
Homo sapiens (19)
Rattus norvegicus (5)
Escherichia coli K-12 (2)
Macaca mulatta (2)
Monodelphis domestica (2)
Sus scrofa domesticus (2)
Oreochromis mossambicus (1)
Moraxella catarrhalis RH4 (1)
Bacteria (1)
Macaca nemestrina (1)
Actinobacillus pleuropneumoniae (1)
Neisseria meningitidis (1)
Listeria monocytogenes (1)
Bos taurus (1)
Escherichia coli (1)
Danio rerio (1)
Petaurus breviceps (1)
Mustela putorius furo (1)
Oryctolagus cuniculus (1)
Macaca fascicularis (1)
Cavia porcellus (1)

Organisms

Sus scrofa (17)
Macaca nemestrina (3)
Taenia solium (1)
Cavia porcellus (1)
Macaca mulatta (1)
pig gut metagenome (1)
Macaca fascicularis (1)
Mus musculus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (105)
ENA (52)
pride (28)
geo (25)
MassIVE (6)
MetaboLights (4)
iProX (2)
PeptideAtlas (2)
ExpressionAtlas (1)

Tissue

Brain (22)
Kidney (6)
Spleen (5)
Lung (5)
Liver (5)
Heart (4)
Pancreas (3)
Diaphragm (2)
Brain microvascular endothelial cell (2)
Cell culture (2)
Testis (2)
Biliary system (1)
Adenohypophysis (1)
Adipose tissue (1)
Adrenal gland (1)
Bile duct (1)
Bladder (1)
Blood plasma (1)
Bone (1)
Breast (1)
Cardiac muscle (1)
Cartilage (1)
Cerebrospinal fluid (1)
Cochlea (1)
Embryo (1)
Epithelial cell (1)
Esophagus (1)
Fat body (1)
PBMC cell line (1)
Sertoli cell (1)

Disease

Bacterial meningitis (2)
Rett syndrome (1)
Pseudorabies virus infected (1)
Familial adenomatous polyposis (FAP) (1)
Exposed_Seronegative (1)
Bacterial sepsis (1)
Huntington Disease (1)
Parkinson's disease (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (28)
Shotgun proteomics (17)
Bottom-up proteomics (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Gel-based experiment (3)
Mass spectrometry (2)
Data-dependent acquisition (2)
Data-independent acquisition (2)
SWATH MS (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Metaproteomics (1)
Proteogenomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (6)
NextSeq 500 (4)
Illumina NovaSeq 6000 (3)
Sony SH800 (2)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - negative - reverse phase (2)
TripleTOF 5600 (2)
Ion Torrent S5 (1)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
None (1)
NextSeq 2000 (1)
HiSeq X Ten (1)
Illumina HiSeq 1500 (1)
NextSeq 550 (1)
1200 series LC/MSD SL (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Sciex (1)
Synapt MS (1)
TripleTOF 6600 (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2010 (17)
2020 (16)
2025 (14)
2015 (14)
2013 (11)
2021 (10)
2026 (9)
2011 (9)
2023 (9)
2014 (8)
2009 (8)
2012 (7)
2022 (7)
2024 (6)
2016 (6)
2018 (5)
2008 (5)
2019 (3)
2005 (2)
2017 (2)
2002 (1)
2003 (1)

UNIPROT ID/AC

A1XQR9 (2)
A1XQT6 (2)
A1XQU5 (2)
A1XQU9 (2)
A4Z6H1 (2)
A5A8V7 (2)
A5GFS8 (2)
A5GFU0 (2)
A5GFY8 (2)
A5GHK3 (2)
A6M928 (2)
A6M930 (2)
A6M931 (2)
A6N8P5 (2)
A7Y521 (2)
A8U4R4 (2)
A9XFX6 (2)
A9YUB1 (2)
B2CCY7 (2)
B3F0B7 (2)
B5APU3 (2)
B5APU8 (2)
B5APV0 (2)
B5KJG2 (2)
B6CVD7 (2)
B6CVL5 (2)
B8XH67 (2)
B8XSJ1 (2)
B9V4F0 (2)
C0SW08 (2)

CHEBI ID

CHEBI:72087 (1)
CHEBI:72086 (1)
CHEBI:72079 (1)
CHEBI:72073 (1)
CHEBI:72068 (1)
CHEBI:71866 (1)
CHEBI:71859 (1)
CHEBI:71857 (1)
CHEBI:71855 (1)
CHEBI:71849 (1)
CHEBI:71848 (1)
CHEBI:71847 (1)
CHEBI:71841 (1)
CHEBI:67073 (1)
CHEBI:74465 (1)
CHEBI:72090 (1)
CHEBI:72091 (1)
CHEBI:72069 (1)
CHEBI:71840 (1)
CHEBI:132785 (1)
CHEBI:71856 (1)
CHEBI:72077 (1)
CHEBI:71850 (1)
CHEBI:67066 (1)
CHEBI:66969 (1)
CHEBI:66970 (1)
CHEBI:66865 (1)
CHEBI:66860 (1)
CHEBI:132744 (1)
CHEBI:66864 (1)

Metabolite Name

2-Aminoethane-1,1,1-Triol (1)
9-(2,3-Dihydroxy-3-Methylbutyl)Furo[3,2-G]Chromen-7-One (1)
2-Methyl-N-[(1-Methylbenzimidazol-2-Yl)Methyl]-7-Oxoazepane-2-Carboxamide (1)
4-Chloro-1H-Indole-3-Acetic Acid (1)
Bisindolylmaleimide Iv (1)
H-D-Arg(No2)-Oh (1)
6-Methyl-5,6-Dihydro-4H-1,3-Thiazin-2-Amine (1)
2-Propylthiazolo[4,5-C]Quinolin-4-Amine (1)
N'-Nitro-L-Arginine (1)
16Alpha_-Hydroxyprednisolone (1)
2-Chloro-6-Fluoro-N-(2-Hydroxy-2-Naphthalen-1-Ylethyl)Benzamide (1)
Nona-2,4,6-Trienoyl-Coa (1)
2-Hydroxypentyl Glucosinolate (1)
2-Methyl-4-Oxo-5-Propylthieno[3,2-C]Pyridine-3-Carboxylic Acid (1)
Galloyl Glucose (1)
N-(2-Methoxyphenyl)-6-(3-Phenylpiperazin-1-Yl)Pyridine-2-Carboxamide (1)
Arginine Chloromethyl Ketone (1)
4-Carbamimidoyl-L-Phenylalanine (1)
Trypanothione Disulfide (1)
16(17)-Epoxy-21-Acetoxy-5-Pregnenolone (1)
Glu Arg Phe (1)
Ethyl-1-(2,4,6-Trihydroxy-3-Isobutyrylphenyl)Butyl]-4-Cyclohexene-1,3-Dione (1)
16,16-Dimethyl Prostaglandin E2 P-(P-Acetamidobenzamido) Phenyl Ester (1)
N-Docosahexaenoyl Aspartic Acid (1)
N-Propyl-L-Arginine (1)
3-[3-[3-Methyl-5-(Oxan-4-Yl)-1,2,4-Triazol-1-Yl]Pyrrolidin-1-Yl]Sulfonylpyridine (1)
1-[1-(3-Methoxyphenyl)-2,5-Dioxopyrrolidin-3-Yl]Piperidine-4-Carboxamide (1)
4-Aminoisoxazolidin-3-One (1)
(E)-8-(2-(4-(Diphenylamino)Benzylidene)Hydrazinyl)-N-Hydroxy-8-Oxooctanamide (1)
Arg Gln Leu (1)

First Public Date

2024 (11)
2025 (8)
2020 (8)
2022 (6)
2021 (5)
2026 (4)
2014 (4)
2019 (2)
2023 (1)
2018 (1)
2016 (1)
2013 (1)

Classification

helminths (1)

Study type

Transcription profiling by array (50)
RNA-seq of coding RNA (21)
ChIP-seq (5)
Unknown experiment type (3)
Animal - High-throughput sequencing (3)
Other (3)
Methylation profiling by array (3)
Transcription profiling by SAGE (2)
Cell line - High-throughput sequencing (2)
Comparative genomic hybridization by array (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Transcription profiling by tiling array (1)
MicroRNA profiling by high throughput sequencing (1)
Bisulfite-seq (1)
ATAC-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (52)
2024 (44)
2025 (43)
2023 (41)
2020 (36)
2019 (36)
2022 (36)
2018 (34)
2015 (28)
2010 (23)
2014 (19)
2016 (18)
2017 (18)
2013 (15)
2012 (15)
2011 (12)
2009 (12)
2008 (7)
2002 (6)
2026 (5)
2007 (5)
2005 (2)
2004 (2)
2003 (2)
2001 (2)
2006 (1)
2000 (1)
1998 (1)
1997 (1)

Lab affiliation

Department of Experimental and Translational Ophthalmology, University Medical Center, Johannes Gutenberg University, Mainz, Germany (3)
State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, Hubei, China (2)
Alborg University (1)
Chair of Proteomics and Bioanalytics Technische Universitaet Muenchen Freising (1)
China Agricultural University (West Campus) College of Animal Science and Technology (1)
Departament de Bioquímica i Biologia Molecular. Facultat de Veterinària. Universitat Autònoma de Barcelona. Cerdanyola del Vallès. 08193 Barcelona. Spain (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (1)
Department of Biomedical Engineering, College of Information and Biotechnology, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Republic of Korea (1)
Department of Biotechnology, Stem cell and biomaterial engineering Lab, Yonsei University, Republic of Korea. (1)
Department of Mechanical Engineering, Pohang University of Science and Technology, Republic of Korea (1)
Division of Cell Matrix Biology & Regenerative Medicine and KNH Centre for Biomedical Egyptology Faculty of Biology, Medicine and Health University of Manchester United Kingdom (1)
Eppley Institute, University of Nebraska Medical Center, United States (1)
Faculty of Science and Engineering, School of Natural Sciences, Macquarie University, Macquarie Park, Sydney 2109, NSW, Australia (1)
He JunJun (1)
Laboratory for Functional Genome Analysis (LAFUGA), Gene Center, LMU Munich, 81377 Munich, Germany (1)
Laboratory of Applied Proteome Analyses, Institute of Animal Physiology and Genetics of the Czech Academy of Sciences, Libechov, Czech Republic (1)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI), Jena, Germany. (1)
MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge Biomedical Campus CB2 0QH Cambridge (1)
National Yang-Ming University Proteomics Research Center (R648), Taipei, 112 Taiwan (ROC) (1)
New England Biolabs, Inc (1)
Target Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, UK (1)
Translational Tissue Engineering Center, Wilmer Eye Institute and Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21287, USA. (1)
Universitat Autònoma de Barcelona (1)
University of Aarhus, Denmark (1)
University of Missouri-Columbia (1)

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Role of breast milk lipid composition in postnatal brain development.

Lipids in the brain play a crucial role as structural and signaling molecules, accounting for approximately 60% of the brain’s dry weight. Several lipid classes exhibit concentration profile differences between humans and other species, including closely related primates, with the most pronounced...

2025-09-25 | MTBLS12481 | MetaboLights

Cavia porcellus spectral library

The guinea pig (cavia porcellus) is an excellent experimental model for translation to many aspects of human physiology and disease yet there is limited experimental information regarding its proteome. In an effort to overcome this gap in our knowledge, we generated a comprehensive spectral library ...

ORGANISM(S): Cavia Porcellus (ncbitaxon:10141)

2018-12-07 | MSV000083199 | MassIVE

Deep sequencing of small RNAs of the pig brain

Small RNAs have been emerged as gene regulators in variety of biological pathways and functions including physiological stress and anxiety response system. In this study, we profiled and cataloged small non-coding RNAs of the pig brain in three different brain regions; the amygdala, hippocampus and ...

ORGANISM(S): Sus scrofa

2020-12-01 | E-MTAB-7499 | biostudies-arrayexpress

Porcine brain library whole brain vs whole brain

series of experiments assesing false positive and background of pig brain library (PBL) microarray Keywords = porcine brain, pig brain

ORGANISM(S): Sus scrofa

2010-06-05 | E-GEOD-456 | biostudies-arrayexpress

Pig brain miRNA profiling

PRJNA623861 | ENA

A high fat diet modifies brain neurotransmitter profile and hippocampal proteome and morphology in an IUGR pig model

Intrauterine Growth Restriction (IUGR) is a pathological condition that hinders the correct growth of the foetus during pregnancy due to oxygen or nutrient deficiency. Consequently, the foetus adapts its metabolism and physiology to survive in such scarce environment. The major adaptation is the so ...

ORGANISM(S): Sus scrofa domesticus (domestic pig)

2022-10-14 | PXD032300 | Pride

Transcription profiling of pig brain and lung to natural infection by Pseudorabies virus

Six piglets (age 2-4 days) suffering from pseudorabies virus were identified during at outbreak at a commercial farm. RNA was extracted from lung (n=4) and brain (n=6) of the infected pigs, and compared to lung/brain RNA from a control pool of three uninfected piglets. Expression profiling used a ...

ORGANISM(S): Sus scrofa

2009-10-02 | E-MEXP-2376 | biostudies-arrayexpress

Transcription profiling of pig cerebral cortex taken at two time points E60 and E80 to identify genes involved in brain gyration

In this study we examined brain gyration using the pig brain as model. Pig cortical tissue from two time points in development representing a non-folded, lissencephalic, brain (embryonic day 60) and primary-folded, gyrencephalic, brain (embryonic day 80) were examined by whole genome expression micr...

ORGANISM(S): Sus scrofa

2009-10-16 | E-GEOD-18467 | biostudies-arrayexpress

Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo, part 5

Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo

ORGANISM(S): Sus scrofa domesticus (domestic pig)

2020-05-26 | PXD011831 | Pride

Brain.toxoplasma gondii Lc-ms Proteomic Itraq Pig

Deep sequencing analysis of the developing mouse brain reveals a novel microRNA

MicroRNAs (miRNAs) are small non-coding RNAs that can exert multilevel inhibition/repression at a post-transcriptional or protein synthesis level during disease or development. Characterisation of miRNAs in adult mammalian brains by deep sequencing has been reported previously. However, to date, no ...

ORGANISM(S): Mus musculus

2011-04-04 | E-GEOD-22653 | biostudies-arrayexpress

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