Post-translational modifications of proteins

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Proteomics (3027)
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Organisms

Homo sapiens (376)
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synthetic construct (1)
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Organisms

Homo sapiens (52)
Mus musculus (48)
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Drosophila melanogaster (8)
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Caenorhabditis elegans (6)
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synthetic construct (1)

Repository

pride (1510)
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Tissue

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Technology Type

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Instrument Platform

Q Exactive (198)
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Q Exactive HF-X (34)
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Publication Date

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2019 (169)
2015 (168)
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2018 (150)
2014 (146)
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2013 (40)
2011 (26)
2012 (24)
2010 (13)
2009 (4)
2008 (2)
2005 (1)
2007 (1)

UNIPROT ID/AC

Q6A4J8 (2)
P62878 (2)
Q923E4 (2)
P97769 (2)
Q76MZ3 (2)
Q9ESN9 (2)
Q9R0T8 (2)
Q91WG5 (2)
Q9WVC6 (2)
P31750 (2)
Q9R1E0 (2)
Q61501 (2)
P97377 (2)
O75676 (1)
O75582 (1)
Q13547 (1)
Q9NYS0 (1)
Q9NNX6 (1)
Q9NQ31 (1)
Q9UHD2 (1)
Q99558 (1)
P29965 (1)
P09671 (1)
P37231 (1)
Q9Y297 (1)
Q15759 (1)
P68400 (1)
P25963 (1)
P17612 (1)
P28482 (1)

ENSEMBL ID

ENSG00000170477 (176)
ENSG00000229353 (122)
ENSG00000147251 (121)
ENSG00000247315 (85)
ENSG00000204131 (81)
ENSG00000176092 (36)

CHEBI ID

CHEBI:30769 (2)
CHEBI:33697 (1)
CHEBI:36080 (1)
CHEBI:181148 (1)
CHEBI:75970 (1)
CHEBI:15444 (1)
CHEBI:134623 (1)
CHEBI:57642 (1)
CHEBI:29127 (1)
CHEBI:145573 (1)
CHEBI:59776 (1)
CHEBI:14737 (1)
CHEBI:57947 (1)
CHEBI:57540 (1)
CHEBI:135063 (1)
CHEBI:71580 (1)
CHEBI:177535 (1)
CHEBI:47878 (1)
CHEBI:89848 (1)
CHEBI:145234 (1)
CHEBI:84981 (1)
CHEBI:36219 (1)
CHEBI:15531 (1)
CHEBI:90452 (1)
CHEBI:28238 (1)
CHEBI:89825 (1)
CHEBI:36090 (1)
CHEBI:64575 (1)
CHEBI:15468 (1)
CHEBI:38264 (1)

Metabolite Name

Alanine (3)
Leucine (2)
Betaine (2)
Choline (2)
Arginine (2)
Cytosine (2)
Glutamine (2)
Glutamic acid (2)
Creatine (2)
Hypoxanthine (2)
Thr-Pro-Arg (1)
Thr-Gly-Arg (1)
Ser-Asp-Arg (1)
Pyroglu-Asn-Arg (1)
L-valine, n-[[1-(5-fluoropentyl)-1h-indol-3-yl]carbonyl]-, methyl ester (1)
Cys-His-Arg (1)
5-methoxy-4-methyl-3-phenylcoumarin (1)
4-phenylbutan-2-ol (1)
3-quinolinecarboxamide, 1,4-dihydro-8-methoxy-4-oxo-1-pentyl-n-tricyclo[3.3.1.13,7]dec-1-yl- (1)
2-methyl-6(s)-(3-pyridyl)tetrahydro-1,2-oxazine (1)
2-furancarboxylic acid, 5-[3-[4-[2-(4-fluorophenyl)ethoxy]phenyl]propyl]- (1)
1h-indole-3-carboxylic acid, 1-(5-fluoropentyl)-, 8-quinolinyl ester (1)
[1,1':4',1''-terphenyl]-3,4'',5-triol (1)
[[4-[5r-chloro-2z-[3r-cyclohexyl-3s-hydroxy-1r-propenyl]-3s-hydroxycyclopentyl]-2r-butenyl]oxy]-acetic acid, isopropyl ester (1)
(s)-n-(1-amino-1-oxo-3-phenylpropan-2-yl)-1-pentyl-1h-indole-3-carboxamide (1)
(3as,5r,5as,8as,9ar)-5,8a-dimethyl-1-methylidene-3a,4,5,5a,6,7,9,9a-octahydroazuleno[6,7-b]furan-2,8-dione (1)
Succinic_acid (1)
Oxoglutaric_acid (1)
Oxalacetic_acid (1)
Fumaric_acid (1)

First Public Date

2014 (26)
2026 (24)
2025 (21)
2024 (20)
2023 (20)
2021 (16)
2019 (11)
2022 (9)
2020 (9)
2013 (9)
2017 (8)
2018 (5)
2016 (5)
2015 (1)

Modelling Approach

Ordinary differential equation model (4)
Other (1)
Differential equation model (1)

Lab affiliation

Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (60)
Centre for Proteome Research, University of Liverpool, Liverpool, UK (9)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (9)
University of Washington (9)
Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA (8)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (7)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (7)
BioArCh, University of York, UK (6)
EDyP (5)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (5)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (5)
Whitehead Institute and MIT (5)
Agronomy College, Henan Agricultural University, China (4)
Carnegie Mass Spectrometry Facility (4)
Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 USA (4)
Institute of Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Bâtiment 23A, 1 avenue de la Terrasse, F-91198 Gif-sur-Yvette cedex, France. (4)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark (4)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark (4)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (4)
School of Pharmacy, University of Wisconsin-Madison (4)
Tokyo Metropolitan Institute of Medical Science (4)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (3)
Carnegie MS facility (3)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (3)
Department of Chemistry, The Scripps Research Institute, La Jolla, CA, USA (3)
Department of Laboratory Medicine and Pathology, Mayo Clinic (3)
Department of Microbiology and Molecular Medicine, CMU, University of Geneva, Geneva, Switzerland (3)
Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (3)
Fundación Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (3)
Gansu Provincial Key Lab of Aridland Crop Science/ Gansu Agricultural University, Lanzhou, China (3)

IsPrivate

False (6)

Model Flag

Non Kinetic (1)

Classification

viruses (5)
protozoa (5)

Modification

N6 (15)
N6-dimethyl-L-lysine (10)
4-tetrahydrothiazine-3-carboxylic acid (5)
2x(15)N labeled L-lysine (4)
4x(15)N labeled L-arginine (4)
+3amu) (2)
4x(2)H labeled dimethylated L-lysine (2)
4 (1)
4'-dihydroxyphenylalanine (1)
4x(2)H labeled dimethylated residue (1)
Not available (1)

Study type

Transcription profiling by array (34)
ChIP-seq (20)
RNA-seq of coding RNA (13)
Proteomic profiling by array (3)
Methylation profiling by high throughput sequencing (3)
ChIP-chip by tiling array (2)
DNA-seq (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
Cell line - One-color microarray (1)
Comparative genomic hybridization by array (1)
Other (1)
CUT&RUN (1)

Release Date

2022 (279)
2023 (276)
2021 (260)
2025 (240)
2020 (237)
2018 (209)
2024 (208)
2019 (188)
2017 (159)
2016 (143)
2015 (139)
2014 (132)
2013 (108)
2012 (85)
2011 (81)
2010 (79)
2009 (41)
2008 (35)
2026 (24)
2007 (20)
2006 (9)
2004 (4)
2003 (4)
2005 (3)
2001 (2)
2002 (1)
2000 (1)
1997 (1)

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Environmental Conditions Elicit a Slow but Enduring Response of Histone Post-Translational Modifications in Mozambique Tilapia

Histone post-translational modifications (PTMs) are epigenetic marks that operate within the central dogma of molecular biology: upon an environmental stimulus, the histone PTMs surrounding DNA can be changed in a way that modifies gene expression, and, therefore, the abundance and composition of RN...

ORGANISM(S): Oreochromis Mossambicus

2024-12-10 | PXD042718 | panorama

Posttranslational modification analysis of Histone H3t

Comprehensive posttranslational modifications in the testis-specific histone variant H3t protein validated in tagged knock-in mice.

ORGANISM(S): Mus Musculus (mouse)

2024-09-13 | PXD052428 | JPOST Repository

Linking post-translational modifications and protein turnover by site-resolved protein turnover (SPOT) profiling

Proteome-wide measurements of protein turnover have largely ignored the impact of post-translational modifications (PTMs). To address this gap, we employ stable isotope labelling and mass spectrometry to measure the turnover of >120,000 peptidoforms including >33,000 phosphorylated, acetylated, and ...

ORGANISM(S): Homo Sapiens

2022-03-14 | PXD023234 | panorama

Integrated proteomic analysis of post-translational modifications by serial enrichment.

Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA. Nat Methods 2013, 10, 634-7. doi: 10.1038/nmeth.2518.

2013-12-10 | MSV000078509 | MassIVE

Smith2010 - Response of FOXO Transcription Factors to Post-Translational Modifications (with acetylation pathway)

Graham R. Smith & Daryl P. Shanley. Modelling the response of FOXO transcription factors to multiple post-translational modifications made by ageing-related signalling pathways. PLoS ONE 5, 6 (2010). FOXO transcription factors are an important, conserved family of regulators of cellular processes i...

2024-09-02 | BIOMD0000000706 | BioModels

Systematic characterization of 21 post-translational modification using synthetic peptides

The data presented in this study in the - context of the ProteoemTools project - is based on the synthesis of about 5000 synthetic peptides carrying 21 different post-translational modifications to systematically characterize their chromatographic and mass spectrometric properties using multimodal L...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2023-04-05 | MSV000091649 | MassIVE

Smith2010 - Response of FOXO Transcription Factors to Post-Translational Modifications Made by Ageing-Related Signalling Pathways

2024-09-02 | BIOMD0000000705 | BioModels

The NAE1-mediated Neddylation operates as an essential post-translational modification checkpoint for effector CD8+ T cells

Cells were lysed with TFA, and precipitated with cold acetone. The precipitates were transferred to E3filters and digestion was performed overnight with trypsin. The peptides were desalted with StageTips, and were analyzed on Eclipse Orbitrap with DIA mode. For MS1, the resolution was set to 120,00...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2024-02-27 | MSV000094179 | MassIVE

Proteo-Genomic Characterization and Mapping of Nucleosomes Decoded by Brd and HP1 Proteins (Chip-Seq data)

Background: Histone post-translational modifications (PTMs) constitute a branch of epigenetic mechanisms that can control the expression of eukaryotic genes in a heritable manner. Recent studies have identified several PTM-binding proteins containing diverse specialized domains whose recognition of ...

ORGANISM(S): Homo sapiens

2012-07-31 | E-GEOD-39579 | biostudies-arrayexpress

Post-Translational Modifications of recombinant Hsp70s expressed in different systems can alter their functional properties

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) Mycobacterium tuberculosis GM 1503

2020-03-13 | PXD011583 | Pride

Hsp70 Qe Post-translational modifications Ptm proteomics

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