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TranscriptomicsThe Transcriptionally Active Regions in the Genome of Bacillus subtilis
The majority of all genes have so far been identified and annotated systematically through in silico gene finding. Here we report the finding of 3,217 strand-specific Transcriptionally Active Regions (TARs) in the genome of Bacillus subtilis by the use of tiling arrays. We have measured the genome-...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2010-05-18 | E-GEOD-16086 | biostudies-arrayexpress
ProteomicsQuantifying missing (phospho)proteome regions with the broad-specificity protease subtilisin
Despite huge efforts to map the human proteome using mass spectrometry the overall sequence coverage achieved to date is still below 50%. Reasons for missing areas of the proteome comprise protease-resistant domains including the lack/excess of enzymatic cleavage sites, non-unique peptide sequences,...
ORGANISM(S): Homo sapiens (Human) 
2017-11-30 | PXD008068 | Pride
Novel phosphorylation sites Proteome coverage Pro-rich regions Alternative enzymes Trypsin Sample preparation Missing proteins 
UnknownSpecific phosphorylation of microtubule-associated protein 2c by extracellular signal-regulated kinase reduces interactions at its Pro-rich regions.
Not available
S-EPMC9520037 | biostudies-literature
TranscriptomicsRNA-seq of wild-type mouse PSM tissues that were microdissected into tailbud, posterior PSM, anterior PSM, and somite regions
To describe gene expression changes associated with differentiation of mouse presomitic mesoderm (PSM) cells into somites, RNA sequencing (paired-end) was performed using non-cultured, wild-type PSM tissues that were microdissected into tailbud, posterior PSM, anterior PSM, and somite regions. Smart...
ORGANISM(S): Mus musculus 
2025-08-06 | E-MTAB-13693 | biostudies-arrayexpress
TranscriptomicsATAC-seq of wild-type mouse PSM tissues that were microdissected into tailbud, posterior PSM, anterior PSM, and somite regions
To describe chromatin accessibility changes associated with differentiation of mouse presomitic mesoderm (PSM) cells into somites, ATAC sequencing (paired-end) was performed using non-cultured, wild-type PSM tissues that were microdissected into tailbud, posterior PSM, anterior PSM, and somite regio...
ORGANISM(S): Mus musculus 
2025-08-06 | E-MTAB-13692 | biostudies-arrayexpress
UnknownProline-rich regions and motifs in trafficking: from ESCRT interaction to viral exploitation.
Not available
S-EPMC3158961 | biostudies-literature
TranscriptomicsChIP analysis on a custom tiling array of U251 human glioblastoma cell line
Missense mutations in the TP53 gene are frequent genetic alterations in human tumor tissue and cell lines. In contrast to wild-type p53, the mutant p53 (mutp53) protein has lost the transcriptional activity towards pro-apoptotic and growth arrest genes, but retained the property to interact with DNA...
ORGANISM(S): Homo sapiens 
2012-12-10 | E-GEOD-35453 | biostudies-arrayexpress
UnknownChanges in ascorbate, glutathione and α-tocopherol concentrations in the brain regions during normal development and moderate hypoglycemia in rats.
Not available
S-EPMC4021725 | biostudies-literature
UnknownDetermination of the elemental composition and antioxidant properties of dates (Phoenix dactyliferia) originated from different regions.
Not available
S-EPMC7316905 | biostudies-literature
UnknownConvergent behavior of extended stalk regions from staphylococcal surface proteins with widely divergent sequence patterns.
Not available
S-EPMC10367597 | biostudies-literature
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