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ProteomicsTargeted cross-linker delivery for in situ mapping of protein conformations and interactions in mitochondria
Current methods for intracellular protein analysis mostly require the separation of specific organelles or the change of intracellular environment. However, the functions of these proteins are determined by their native microenvironment as they usually form complexes with ions, nucleic acids, and ot...
ORGANISM(S): Homo sapiens (Human) 
2023-05-26 | PXD038658 | Pride
In-cell cross-linking Mitochondria Protein conformations and interactions Nanocarrier delivery Chemical cross-linking mass spectrometry 
TranscriptomicsChromosome positioning and the clustering of functionally related loci in yeast is driven by chromosomal interactions
In recent years there has been considerable and growing interest in the 3-dimensional organization of genomes. In yeast this has included detailed FISH studies that show a surprising degree of spatial clustering of the tRNA genes, the localization of telomeres, centromere positioning, and global stu...
ORGANISM(S): Saccharomyces cerevisiae 
2012-07-18 | E-GEOD-33018 | biostudies-arrayexpress
ProteomicsTargeted cross-linker delivery for in situ mapping of protein conformations and interactions in mitochondria
Current methods for intracellular protein analysis mostly require the separation of specific organelles or the change of intracellular environment. However, the functions of these proteins are determined by their native microenvironment as they usually form complexes with ions, nucleic acids, and ot...
ORGANISM(S): Homo sapiens (Human) 
2023-05-26 | PXD035433 | Pride
Mitochondria In-situ cross-linking Nanoparticles delivery Protein conformations and interactions Chemical cross-linking mass spectrometry 
UnknownImpact of protein and small molecule interactions on kinase conformations.
Not available
S-EPMC11293870 | biostudies-literature
UnknownExploring voltage-gated sodium channel conformations and protein-protein interactions using AlphaFold2.
Not available
S-EPMC11507785 | biostudies-literature
ProteomicsMultiplicity of regulatory subunit conformations define structural ensemble of reset Protein Kinase A holoenzyme
How Protein kinase A (PKA) is reset to a basal state following 3’5’cyclic adenosine monophosphate(cAMP)-mediated activation is unknown. Here we describe the mechanism of cAMP-PKA signal termination leading to reset of PKA by holoenzyme formation through the obligatory action of phosphodiesterases (P...
ORGANISM(S): Bos taurus (Bovine) Homo sapiens (Human) 
2025-07-14 | PXD061315 | Pride
Reset Conformational dynamics Signal termination Phosphodiesterase Protein kinase a 
UnknownMotions on the millisecond time scale and multiple conformations of HIV-1 capsid protein: implications for structural polymorphism of CA assemblies.
Not available
S-EPMC3325613 | biostudies-literature
UnknownTargeted Analysis of Mitochondrial Protein Conformations and Interactions by Endogenous ROS-Triggered Cross-Linker Release.
Not available
S-EPMC11672262 | biostudies-literature
UnknownEnriching Traditional Protein-protein Interaction Networks with Alternative Conformations of Proteins.
Not available
S-EPMC5543104 | biostudies-literature
UnknownRole of N-glycosylation as a determinant of ATG9A conformations and activity.
Not available
S-EPMC12743292 | biostudies-literature
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