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MetabolomicsMetabolomics of the interaction between PPAR-alpha and age in the PPAR-alpha-null mouse (NMR assay)
Regulation between the fed and fasted state in mammals is partially controlled by peroxisome proliferator activated receptor-alpha (PPAR-alpha). Expression of the receptor is high in liver, heart and skeletal muscle, but decreases with age. A combined 1H NMR spectroscopy and GC-MS metabolomic approa...
2018-10-11 | MTBLS261 | MetaboLights
GenomicsFunctional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks
Functional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks
PRJNA553196 | ENA
TranscriptomicsThe genomic landscape of cohesin-associated chromatin interactions
Cohesin is implicated in establishing tissue-specific DNA loops that target enhancers to promoters, and also localizes to sites bound by the insulator protein CTCF, which blocks enhancer-promoter communication. However, cohesin-associated interactions have not been characterized on a genome-wide sca...
ORGANISM(S): Mus musculus 
2013-05-22 | E-GEOD-42237 | biostudies-arrayexpress
ProteomicsAkt2 partners L6 myoblasts - Novel Endogenous, Insulin-Stimulated Akt2 Protein Interaction Partners in L6 Myoblasts
Insulin resistance and Type 2 diabetes are marked by an aberrant response in the insulin signaling network. The phosphoinositide-dependent serine/threonine kinase, Akt2, plays a key role in insulin signaling and glucose uptake, most notably within skeletal muscle. Protein-protein interaction regul...
ORGANISM(S): Rattus norvegicus (Rat) 
2015-09-30 | PXD002557 | Pride
Akt2 Hplc-esi-ms/ms Rock2 
ProteomicsThe protein interaction landscape of breast cancer
Cancers have been associated with diverse sets of genomic alterations, many of which are rare with uncertain significance. To understand the cellular mechanisms impacted by such alterations in breast invasive carcinoma, we have applied affinity-purification mass spectrometry to delineate comprehensi...
ORGANISM(S): Homo sapiens (Human) 
2021-11-02 | PXD019639 | Pride
Brca1 Spinophilin Proteomics Protein-protein interaction network Akt Breast cancer 
UnknownTrifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states.
Not available
S-EPMC4811778 | biostudies-literature
TranscriptomicsThe growth factor environment defines distinct pluripotent ground states in novel blastocyst derived stem cells
Pluripotent stem cell lines can be derived from blastocyst embryos, which yield embryonic stem cell lines (ES cells), as well as the post-implantation epiblast, which gives rise to epiblast stem cell lines (EpiSCs). Remarkably, ES cells and EpiSCs display profound differences in the combination of g...
ORGANISM(S): Mus musculus 
2010-05-17 | E-GEOD-12519 | biostudies-arrayexpress
UnknownIRAA: A statistical tool for investigating a protein-protein interaction interface from multiple structures.
Not available
S-EPMC9793972 | biostudies-literature
UnknownPiSite: a database of protein interaction sites using multiple binding states in the PDB.
Not available
S-EPMC2686547 | biostudies-literature
ProteomicsProtein interaction map of APOBEC3 enzyme family
Human APOBEC3 enzymes are a family of single-stranded (ss)DNA and RNA cytidine deaminases that act as part of the intrinsic immunity against viruses and retroelements. APOBEC3s deaminate cytosine to form uracil which can functionally inactivate or cause degradation of viral or retroelement genomes. ...
ORGANISM(S): Homo sapiens (Human) 
2024-04-16 | PXD044275 | Pride
Apobec3 Ppi Interaction network Ap-ms 
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