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TranscriptomicsIntegrating Large-Scale Functional Genomic Data to Dissect the Complexity of Yeast Regulatory Networks
A major goal of biology is the construction of networks that predict complex system behavior. We combine multiple types of molecular data, including genotypic, expression, transcription factor binding site (TFBS), and protein-protein interaction (PPI) data previously generated from a number of yeas...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-15 | E-GEOD-11111 | biostudies-arrayexpress
ProteomicsDeciphering the Protein-Protein Interaction Network Regulating Hepatocelluler Carcinoma Metastasis
Hepatocellular carcinoma (HCC) is one of the leading causes of mortality related to cancer all over the world. The poor prognosis of HCC is mostly due to recurrence and tumor metastasis. In order to better understand the molecular mechanisms of HCC metastasis, we analyzed the proteome of three HCC c...
ORGANISM(S): Homo sapiens (Human) 
2017-06-20 | PXD005647 | Pride
Dimethylation  hcc  lc-ms/ms  protein-protein interaction  quantitative proteomics  tumor progression 
UnknownProtein-Protein Interaction (PPI) Network of Zebrafish Oestrogen Receptors: A Bioinformatics Workflow.
Not available
S-EPMC9143887 | biostudies-literature
TranscriptomicsHost and pathogen interaction: time course [zebrafish]
The interaction between fungal pathogen and host during infection is a complex and dynamic process. To resolve this, we chose the zebrafish model organism as the host to study C. albicans infection via systems biology approach. Transcriptome microarray data and histological analysis of surviving fis...
ORGANISM(S): Danio rerio 
2013-08-26 | E-GEOD-32118 | biostudies-arrayexpress
TranscriptomicsHost and pathogen interaction: time course [C. albicans]
The interaction between fungal pathogen and host during infection is a complex and dynamic process. To resolve this, we chose the zebrafish model organism as the host to study C. albicans infection via systems biology approach. Transcriptome microarray data and histological analysis of surviving fis...
ORGANISM(S): Candida albicans 
2013-08-26 | E-GEOD-32117 | biostudies-arrayexpress
TranscriptomicsSystematic identification of changes in the yeast protein interaction network in response to environmental, chemical, and genetic perturbation [transcriptome data]
To understand the principles underlying protein-protein interaction (PPI) complex changes in response to external perturbations, we created a highly multiplexed version of the murine dihydrofolate reductase protein complementation assay (mDHFR PCA) in Saccharomyces cerevisiae, allowing quantitative ...
ORGANISM(S): Saccharomyces cerevisiae 
2017-04-30 | E-GEOD-72423 | biostudies-arrayexpress
UnknownNAPAbench 2: A network synthesis algorithm for generating realistic protein-protein interaction (PPI) network families.
Not available
S-EPMC6984706 | biostudies-literature
UnknownProtein-protein interaction (PPI) network analysis reveals important hub proteins and sub-network modules for root development in rice (Oryza sativa).
Not available
S-EPMC10225403 | biostudies-literature
ProteomicsProtein interaction map of APOBEC3 enzyme family
Human APOBEC3 enzymes are a family of single-stranded (ss)DNA and RNA cytidine deaminases that act as part of the intrinsic immunity against viruses and retroelements. APOBEC3s deaminate cytosine to form uracil which can functionally inactivate or cause degradation of viral or retroelement genomes. ...
ORGANISM(S): Homo sapiens (Human) 
2024-04-16 | PXD044275 | Pride
Apobec3 Ppi Interaction network Ap-ms 
GenomicsSaccharomyces cerevisiae strain:ySYNAG
Protein-protein interaction characterization using synthetic yeast agglutination
PRJNA380247 | ENA
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