Protemics - OmicsDI

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Proteomics (29)
Unknown (5)
Genomics (2)

Organisms

Andropogon gerardi (23)
Bacteria (23)
Canis lupus familiaris (23)
Cnidaria (23)
Eukaryota (23)
Fasciola (23)
Hepatitis B virus (23)
Human alphaherpesvirus 1 strain 17 (23)
Human alphaherpesvirus 1 strain KOS (23)
Human betaherpesvirus 5 (23)
Human herpesvirus 2 strain 186 (23)
Madurella mycetomatis (23)
Mesocricetus auratus (23)
Miscanthus x giganteus (23)
Mus musculus (23)
Orthoflavivirus (23)
Panicum virgatum (23)
Platyhelminthes (23)
Pseudomonas aeruginosa AES-1R (23)
Rattus norvegicus (23)
Rattus rattus (23)
Rhodococcus jostii RHA1 (23)
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Sorghastrum nutans (23)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (23)
Streptococcus pneumoniae (23)
Homo sapiens (2)
Cucumis sativus var. sativus (1)
Escherichia coli (1)
Mus musculus (1)

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Mus musculus (1)
Homo sapiens (1)

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pride (23)
iProX (3)
ENA (2)
biostudies-arrayexpress (1)
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MassIVE (1)

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Cell culture (6)
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Arrhythmogenic right ventricular cardiomyopathy (1)
Cervix carcinoma (1)
Cholangiocarcinoma (1)
Duchenne muscular dystrophy (1)
Glioblastoma (1)
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Technology Type

Mass Spectrometry (23)
Shotgun proteomics (12)
Bottom-up proteomics (3)
Top-down proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

LTQ Velos (1)

Publication Date

2023 (6)
2019 (4)
2024 (3)
2021 (3)
2018 (3)
2026 (2)
2025 (2)
2022 (2)
2015 (2)
2017 (1)
2020 (1)

First Public Date

2026 (2)

Study type

Proteomic profiling by mass spectrometer (1)

Release Date

2017 (1)
2021 (1)
2016 (1)
2014 (1)
2012 (1)
2011 (1)

Lab affiliation

Protemics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (2)
Assistant Professor, Department of Chemistry, The ScrippsResearch Institute (1)
Associate Professor, Department of Biomedical Sciences,Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen. (1)
Center for Diagnostics, Section Mass Spectrometry and Protemics, University Medical Center Hamburg-Eppednorf, Hamburg, Germany (1)
Department of Biochemistry and Genetics, School of Molecular Science, La Trobe University, Melbourne, Australia (1)
Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, USA (1)
Department of Biology, Hong Kong Baptist University, Hong Kong (1)
Department of Biomedical Sciences, University of Sassari, Sassari, 07100, Italy (1)
Department of Chemistry and Chemical Biology, Harvard University (1)
Forschungszentrum Juelich ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (1)
Institute of Biochemistry and Biophysics PAS (1)
Karolinska Institutet, Department of Oncology-Pathology, Pär Nordlund's lab Stockholm, SE 171 77 (1)
Laboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa emEnergia e Materiais (CNPEM) (lab head) (1)
MC (1)
Mass Spectometry and Protemics Core Facility, Institute for Research in Biomedicine (1)
Pacific Northwest National Laboratory (1)
Protemics Center, Erasmus MC Rotterdam (1)
Protemics Service, CIC bioGUNE, Zamudio, Spain (1)
Quantitative Protemics/Metabolomics Berlin Institute for Medical System Biology @ Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association Robert-Rössle-Straße 10, 13125 Berlin, Germany (1)
Senior Researcher, Institute for Virology and Immunobiology, University of Würzburg, Versbacher Strasse 7, 97078 Würzburg, Germany (1)
Signature Science (1)
University of Bristol (1)

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optTMT: optimizing any experimental design to minimize false positives caused by TMT reporter ion interference

Human induced pluripotent stem cell (iPSC) technology holds great potential for therapeutic and research purposes, by providing improved models of disease and for studying mechanisms regulating differentiation. The Human Induced Pluripotent Stem Cell Initiative (HipSci) was established to generate l...

ORGANISM(S): Homo sapiens (Human)

2026-02-26 | PXD063953 | Pride

Mus musculus

Mus musculus Raw sequence reads

PRJNA1218513 | ENA

Homo sapiens

Homo sapiens Raw sequence reads

PRJNA1218517 | ENA

Proteomic profiling of NCI60 cell lines from Cancer Cell Line Encyclopedia

This ArrayExpress record contains meta-data and results of quantitative analysis of cell lines from the NCI-60 panel using pressure cycling technology (PCT) and SWATH-mass spectrometry. Each cell line was analyzed in duplicate. Raw data files are available at the EMBL-EBI protemics data archive (PRI...

ORGANISM(S): Homo sapiens

2017-01-27 | E-PROT-2 | biostudies-arrayexpress

The mechanism of tigecycline resistance in Acinetobacter baumannii under sub-minimal inhibitory concentration tigecycline

The mechanism of tigecycline resistance in Acinetobacter baumannii under sub-minimal inhibitory concentration tigecycline by comparative protemics

ORGANISM(S): Escherichia Coli

2024-01-26 | PXD048947 |

Blumea balsamifera of protemics

Drought restricts plant growth and agricultural production. As an important medicinal plant, Blumea balsamifera is sensitive to water, but there is still a lack of systematic research on its drought response mechanism.

ORGANISM(S): Blumea

2025-07-14 | PXD063289 | Pride

Fusarium oxysporum f. sp. vasinfectum (UP000030701) extracellular vesicle, secretome, and cell lysate proteomes

We performed a comparative study to determine the proteome of extracellular vesicles (EVs) from the cotton pathogen Fusarium oxysporum f. sp. vasinfectum (Fov), recovered from two growth conditions in vitro. Label-free quantitative protemics was used to find significant enrichment of proteins betwe...

ORGANISM(S): Fusarium oxysporum f. sp. vasinfectum 25433

2021-03-08 | PXD023907 | Pride

Cotton Fungi Fusarium oxysporum Lc-ms/ms

Protemics of human cell during HHV-6A reactivation

HHV-6A is a human herpesvirus that integrates into human sub telomeric regions to acquire latency. This latent virus frequently reactivates causing numerous diseases. The project was aimed to understand changes in host cell prteomics upon virus reactivation, which might helpin understanding the path...

ORGANISM(S): Homo sapiens (Human)

2020-04-07 | PXD016211 | Pride

Hhv-6a Viral reactivation

Protemics analysis of firefighters after an exercise session

This project has the aim to understand the systemic regulation of physiological processes during a high-demand exercise session. The exercise session consisted of a group of 13 volunteer firefighters that run for 45 min (~2 miles) with full combat gear in a hilly terrain in Santa Clarita, CA. Blood,...

ORGANISM(S): Homo sapiens (Human)

2023-06-07 | PXD020122 | Pride

Plasma Proteomics High-physical demand Exercise

Protemics of Mettl3-deficient NK cells

With mass spectrometry， we aim to find the differentially expressed proteins in Mettl3-deficient NK cells

ORGANISM(S): Mus Musculus

2021-07-20 | PXD025823 |

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