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ProteomicsA strategy to characterize the global histone PTM landscape within tissues of non-model organisms
Histone post-translational modifications (PTMs) are epigenetic marks that play a critical role in the expression and maintenance of DNA, but they remain largely uninvestigated in non-model organisms due to technical challenges. To begin alleviating this issue, we developed a workflow for histone PTM...
ORGANISM(S): Oreochromis Mossambicus 
2024-02-29 | PXD040536 | panorama
ProteomicsG6PD K403 acetylation-dependent PTM
To identify acetylation-dependent posttranslational modifications (PTMs) of G6PD, site-specifically acetylated and Flag-tagged G6PD was expressed in HEK293T cells by genetically encoding the incorporation of acetylated lysine in response to an in-frame TAG stop codon. K403-acetylated G6PD (sample) a...
ORGANISM(S): Homo sapiens (Human) 
2023-10-24 | PXD041775 | Pride
Human g6pd Ptm-dependent ptm Acetylation Phosphorylation 
UnknownEvolution of a mass spectrometry-grade protease with PTM-directed specificity.
Not available
S-EPMC5187733 | biostudies-literature
UnknownIntegrative multi-omics analysis identifies a PTM-related immune signature and IRF9 as a driver in ccRCC.
Not available
S-EPMC12702869 | biostudies-literature
ProteomicsArabidopsis thaliana PTM dynamics during dark-light transition
Two proteomics DDA experiments investigating dynamics of post-translational modifications in Arabidopsis thaliana whole leaf rosettes at multiple harvest times around dark to light transition. One experiment regarding acetylation (K) and phosphorylation (STY) after serial enrichment of dimethyl labe...
ORGANISM(S): Arabidopsis Thaliana (mouse-ear Cress) 
2023-07-21 | PXD041832 | JPOST Repository
GenomicsNucleosome conformation dictates the histone code
Histone post-translational modifications (PTMs) play a critical role in chromatin regulation. It has been proposed that these PTMs form localized “codes” that are read by specialized domains (reader domains) in chromatin associated proteins (CAPs) to regulate downstream function. Substantial effort ...
ORGANISM(S): Homo sapiens 
2021-05-06 | GSE150617 | GEO
TranscriptomicsAn Improved SNAP-ADAR Tool Enables Efficient RNA Base Editing to Interfere with Post-translational Protein Modification
RNA base editing applies endogenous or engineered adenosine deaminases to introduce adenosine-to-inosine changes into a target RNA in a highly programmable manner. Recently, notable success was achieved for the repair of disease-causing guanosine-to-adenosine mutations by means of RNA base editing. ...
ORGANISM(S): Homo sapiens 
2024-04-19 | GSE264114 | GEO
ProteomicsIntegrative proteomics of macrophage in response to LPS stimulation
PTM proteomics had been increasingly used in studies related to inflammation and immunity, but the integrated analysis of multiple PTM was lacking. Here, we integrated WCP, acetylome, phosphoproteome and ubiquitinome datasets to identify LPS stimulation-dependent PTM events in macrophages with or wi...
ORGANISM(S): Homo Sapiens Mus Musculus 
PXD015527 |
ProteomicsThe NAE1-mediated Neddylation operates as an essential post-translational modification checkpoint for effector CD8+ T cells
Cells were lysed with TFA, and precipitated with cold acetone. The precipitates were transferred to E3filters and digestion was performed overnight with trypsin. The peptides were desalted with StageTips, and were analyzed on Eclipse Orbitrap with DIA mode. For MS1, the resolution was set to 120,00...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2024-02-27 | MSV000094179 | MassIVE
ProteomicsCFTR PTM analysis
CFTR IPs with different CFTR mutants or under different conditions to identify CFTR PTMs.
ORGANISM(S): Rattus Sp. (ncbitaxon:10118) Homo Sapiens (ncbitaxon:9606) 
MSV000082908 | MassIVE
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