Ramesh A A - OmicsDI

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Unknown (1291)
Transcriptomics (81)
Proteomics (25)
Genomics (15)
Genomic (1)
Metabolomics (1)

Organisms

Mus musculus (45)
Homo sapiens (35)
Drosophila melanogaster (6)
Oryza sativa (5)
Escherichia coli (5)
Bombyx mori (4)
Rattus norvegicus (3)
Plasmodium falciparum Dd2 (2)
Phytophthora infestans (2)
Arabidopsis thaliana (2)
Bos taurus (2)
Coprinopsis cinerea (1)
Bacteria (1)
Caenorhabditis elegans (1)
Mytilus edulis (1)
Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120200 (1)
Turnip crinkle virus (1)

Organisms

soil metagenome (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (92)
pride (23)
ENA (5)
MassIVE (2)
dbGaP (1)
EGA (1)
MetaboLights (1)

Tissue

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Disease

Colorectal cancer (2)
Disease free (2)
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Disease of metabolism (1)
Gastric adenocarcinoma (1)
Mucinous pancreas adenocarcinoma (1)
Plasmodium falciparum malaria (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (23)
Shotgun proteomics (11)
Data-dependent acquisition (3)
Top-down proteomics (3)
Bottom-up proteomics (2)
Gel-based experiment (2)
SWATH MS (2)
Mass spectrometry (1)
Affinity purification coupled with mass spectrometry proteomics (1)
All-ion fragmentation (1)
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DiaPASEF (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

ScanArray 6000 [Perkin Elmer] (4)
Illumina NovaSeq X (2)
ScanArray [PerkinElmer] (1)
Illumina NovaSeq 6000 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
Liquid Chromatography MS - Alternating (LC-MS (Alt)) (1)

Publication Date

2014 (19)
2015 (12)
2012 (11)
2013 (10)
2025 (7)
2011 (7)
2016 (6)
2010 (6)
2008 (6)
2020 (5)
2005 (5)
2024 (5)
2026 (4)
2021 (4)
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2018 (2)
2009 (2)
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2007 (1)
2019 (1)

CHEBI ID

CHEBI:12427 (1)
CHEBI:131690 (1)
CHEBI:131691 (1)
CHEBI:131692 (1)
CHEBI:131743 (1)
CHEBI:133145 (1)
CHEBI:133657 (1)
CHEBI:133734 (1)
CHEBI:137334 (1)
CHEBI:137889 (1)
CHEBI:138026 (1)
CHEBI:138421 (1)
CHEBI:138517 (1)
CHEBI:138523 (1)
CHEBI:138560 (1)
CHEBI:140773 (1)
CHEBI:145205 (1)
CHEBI:145206 (1)
CHEBI:145207 (1)
CHEBI:145208 (1)
CHEBI:145209 (1)
CHEBI:145210 (1)
CHEBI:145211 (1)
CHEBI:145212 (1)
CHEBI:145213 (1)
CHEBI:145214 (1)
CHEBI:145215 (1)
CHEBI:145216 (1)
CHEBI:145218 (1)
CHEBI:145219 (1)

Metabolite Name

(R)-3-Hydroxy-Octadecanoic acid (1)
(R)-3-Hydroxy-tetradecanoic acid (1)
(S)-3-Hydroxytetradecanoyl-CoA (1)
(S)-Succinyldihydrolipoamide (1)
1-(sn-Glycero-3-phospho)-1D-myo-inositol (1)
11-Dehydrocorticosterone (1)
11-trans-Leukotriene C4 (1)
11b-Hydroxyprogesterone (1)
12-Hydroxynevirapine (1)
13'-Carboxy-alpha-tocopherol (1)
13'-Hydroxy-alpha-tocotrienol (1)
13-cis-Retinoic acid (1)
17-beta-estradiol 3-sulfate-17-(beta-D-glucuronide) (1)
1D-Myo-inositol 1,4-bisphosphate (1)
1D-Myo-inositol 3,4-bisphosphate (1)
2,3-Epoxyaflatoxin B1 (1)
2,8-Dihydroxyquinoline-beta-D-glucuronide (1)
2-Phenylacetamide (1)
27-Deoxy-5b-cyprinol (1)
3,4-Dihydroxybenzeneacetic acid (1)
3,4-Dihydroxymandelaldehyde (1)
3,4-Dihydroxymandelic acid (1)
3-Dechloroethylifosfamide (1)
3-Dehydrosphinganine (1)
3-Dehydroxycarnitine (1)
3-Hydroxyanthranilic acid (1)
3-Hydroxymethylantipyrine (1)
3-Keto-b-D-galactose (1)
3-Methoxy-4-hydroxyphenylglycol glucuronide (1)
3-Methyl-2-oxovaleric acid (1)

First Public Date

2026 (3)
2023 (2)

Modification

Not available (1)

Study type

Transcription profiling by array (48)
RNA-seq of coding RNA (12)
RNA-seq of non coding RNA (10)
ChIP-seq (9)
Comparative genomic hybridization by array (4)
ChIP-chip by tiling array (2)
Unknown experiment type (1)
Genotyping by array (1)
ATAC-seq (1)
RIP-seq (1)
Other (1)

Release Date

2022 (176)
2025 (157)
2023 (148)
2021 (144)
2024 (142)
2020 (90)
2019 (74)
2018 (59)
2014 (55)
2016 (53)
2015 (41)
2017 (39)
2012 (34)
2010 (28)
2026 (27)
2013 (25)
2011 (25)
2008 (22)
2009 (21)
2007 (5)
2005 (5)
2006 (3)
2001 (3)
2004 (2)
2002 (2)
2003 (1)
1997 (1)

Lab affiliation

Professor and Deputy Director Center for systems biology and molecular medicine Yenepoya Research Center Yenepoya (Deemed to be University) Mangalore, India (2)
Assistant Professor of Neurosurgery Department of Neurosurgery Houston Methodist Research Institute Weill Cornell Medical College (1)
Biological Sciences Florida A&M University Tallahassee FL 32307 USA (1)
Center for Systems Biology and Molecular Medicine (CSBMM) Yenepoya(Deemed to be University) Mangalore - 575018, India (1)
Center for Systems Biology and Molecular Medicine, Yenepoya Research Center, Yenepoya(Deemed to be University) (1)
Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, India (1)
Department of Molecular and Cellular Biology, University of Geneva, Switzerland (1)
Department of Radiation Oncology, Weill Cornell Medicine, New York, NY, USA; Department of Pathology, University of Massachusetts Medical School, Worcester, MA, USA. (1)
Dr. Jayaseelan Murugaiyan, Institute of Animal Hygiene and Environmental Health, Centre for Infectious Medicine, Free University of Berlin, Robert-von-Ostertag-Str. 7-13, Berlin 14163, Germany. Jayaseelan.murugaiyan@fu-berlin.de Department of Biotechnology, SRM University AP, Andhra Pradesh, Neerukonda, Mangalagiri, Andhra Pradesh 522 502, India. jayaseelan.m@srmap.edu.in (1)
Englander Institute of Precision Medicine Professor Radiation Oncology Professor Physiology and Biophysics Weill Cornell Medicine 1300 York Avenue Room E215 New York, NY 10065 tel 646-962-2160 (1)
Flinders Centre for Innovation in Cancer, Flinders University, Level 3, Flinders Centre for Innovation in Cancer Building, Flinders Drive, Bedford Park 5042, Australia. (1)
Helmholtz Zentrum München, Institute of Lung Biology and Disease, Group Regenerative Biology and Medicine, Munich, Germany, Member of the German Centre for Lung Research (DZL) (1)
Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0017, Japan (1)
Pennsylvania State University (1)
Professor and Deputy Director Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Deralakatte, Mangalore, India (1)
Professor and Deputy Director Center for Systems Biology, Yenepoya Research Centre, Yenepoya (Deemed to be University) (1)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, India (1)
Radiation Oncology Department; Weill Cornell Medicine, NY, 10065 (1)
School of Cellular and Molecular Medicine, University of Bristol (1)
Systematische Proteomforschung & Bioanalytik - Institut für Experimentelle Medizin (IEM) Christian-Albrechts-Universität zu Kiel Niemannsweg 11 (Campus UK-SH, Kiel) 24105 Kiel, Germany (1)
University of Bristol, UK (1)
Öst Lab, BKV, Linköping University (1)

Tags

xref:PubMed:37092728 (1)

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Watermelon Proteome - To determine the differential expression of proteins in leaf and fruit of diploid and tetraploid watermelon

To determine the differential expression of proteins in leaf and fruit of diploid and tetraploid watermelon

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2019-11-11 | PXD005179 | Pride

Transcription profiling of mouse megakaryocyte differentiation

Megakaryocyte (MK) differentiation is well described in morphologic terms but its molecular counterparts and the basis for platelet release are incompletely understood. We profiled mRNA expression in populations of primary mouse MKs representing successive differentiation stages. Genes associated wi...

ORGANISM(S): Mus musculus

2008-11-07 | E-GEOD-6593 | biostudies-arrayexpress

Factors influencing wind turbine avoidance behaviour of a migrating soaring bird.

Not available

S-EPMC9019107 | biostudies-literature

Olanzapine-Associated Chronic Urinary Retention and Ciliochoroidal Effusion: Rare Adverse Effects of a Commonly Prescribed Antipsychotic.

Not available

S-EPMC9896110 | biostudies-literature

A novel class of potent antiangiogenic and antioxidant pyrazoles: synthesis, bioactivity, docking and ADMET studies.

Not available

S-EPMC11622771 | biostudies-literature

Extracellular Vesicles in Oncology: from Immune Suppression to Immunotherapy.

Not available

S-EPMC7882565 | biostudies-literature

1,2,4 triazolo[1,5-a] pyrimidin-7-ones as novel SARS-CoV-2 Main protease inhibitors: In silico screening and molecular dynamics simulation of potential COVID-19 drug candidates.

Not available

S-EPMC7508019 | biostudies-literature

Temporal phosphoproteomic analysis of VEGF-A signaling in HUVECs: An insight into early signaling events associated with angiogenesis

Aim of the study was to elucidate the phosphoproteomics alterations caused by the treatment of VEGF-A in HUVEC cells at early timepoints of 1, 5 and 10 minutes. Label-free quantitative temporal phosphoproteomics experiments were carried out using LC-MS/MS methods. LTQ orbitrap XL ETD (Thermo Electro...

ORGANISM(S): Homo sapiens (Human)

2023-10-24 | PXD038133 | Pride

Angiogenesis Vegf-a Cytoskeleton organization Quantitative phosphoproteomics

Molecular Modeling and Functional Analysis of Exome Sequencing-Derived Variants of Unknown Significance Identify a Novel, Constitutively Active FGFR2 Mutant in Cholangiocarcinoma.

Not available

S-EPMC6369924 | biostudies-literature

The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis

Histone variants play crucial roles in gene expression, genome integrity and chromosome segregation. However, to what extent histone variants control chromatin architecture remains largely unknown. Here, we show that the previously uncharacterized histone variant H2A.W plays a crucial role in conde...

ORGANISM(S): Arabidopsis thaliana

2014-07-05 | E-GEOD-50942 | biostudies-arrayexpress

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1416 Results

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