Rat proteome - OmicsDI

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Proteomics (893)
Unknown (487)
Transcriptomics (51)
Genomics (30)
Other (9)
Metabolomics (8)
Multiomics (1)

Organisms

Homo sapiens (745)
Mus musculus (745)
Allexis (744)
Arabidopsis thaliana (744)
Callinectes sapidus (744)
Rattus norvegicus (42)
Homo sapiens (29)
Rattus rattus (18)
Mus musculus (8)
cellular organisms (3)
Danio rerio (2)
Agaricus bisporus (1)
Rhodococcus opacus (1)
Thermotoga maritima MSB8 (1)
Thalassiosira pseudonana CCMP1335 (1)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)
Roseburia inulinivorans DSM 16841 (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Streptomyces lividans (1)
Entamoeba histolytica (1)
Schizosaccharomyces pombe (1)
Staphylococcus aureus (1)
Heterocephalus glaber (1)
Caenorhabditis elegans (1)
Corynebacterium glutamicum ATCC 13032 (1)
Saccharomyces cerevisiae (1)
rat gut metagenome (1)
Cervus nippon (1)
Mus (1)
Rattus norvegicus albus (1)

Organisms

Rattus norvegicus (12)
Mus musculus (6)
Homo sapiens (3)
rat gut metagenome (1)

Repository

pride (745)
MassIVE (54)
biostudies-arrayexpress (47)
iProX (41)
ENA (29)
PAXDB (28)
jPOST (19)
geo (11)
GPMDB (7)
MetaboLights (7)
PanoramaPublic (2)
GNPS (1)

Tissue

Brain (179)
Cell culture (108)
Heart (76)
Liver (60)
Kidney (50)
Epithelial cell (32)
Lung (23)
Primary cell (18)
Blood plasma (16)
Hepatocyte (13)
Testis (12)
Cardiac muscle cell (11)
Permanent cell line cell (11)
Amygdala (9)
Fibroblast (9)
Neuron (9)
Skin (9)
Blood (8)
Cerebrospinal fluid (8)
Microglial cell (8)
Spleen (8)
Type B pancreatic cell (8)
Astrocyte (7)
Macrophage (7)
Retina (7)
Skeletal muscle (7)
Urine (7)
Hippocampus (6)
Stem cell (6)
T cell (6)

Disease

Disease free (25)
Cardiovascular system disease (20)
Type 2 diabetes mellitus (11)
Wounds and Injuries (8)
Not Available (7)
Breast cancer (6)
Myocardial ischemia (6)
Post-traumatic stress disorder (6)
Alzheimer's disease (5)
Brain ischemia (5)
Chronic kidney disease (5)
Mixed disorder as reaction to stress (4)
Parkinson's disease (4)
Glaucoma (3)
Mental depression (3)
Osteoarthritis (3)
Amyotrophic lateral sclerosis (2)
Glioblastoma (2)
Hypertension (2)
Insulinoma (2)
Nephrolithiasis (2)
Obesity (2)
Urinary bladder cancer (2)
Alzheimer's disease 1 (1)
COVID-19 (1)
Chagas disease (1)
Chronic kidney disease (1)
Congestive heart failure (1)
FTDALS1 (1)
Male infertility (1)

Technology Type

Mass Spectrometry (745)
Shotgun proteomics (465)
Bottom-up proteomics (135)
Data-dependent acquisition (83)
Affinity purification coupled with mass spectrometry proteomics (71)
Gel-based experiment (61)
Data-independent acquisition (30)
SWATH MS (28)
Top-down proteomics (23)
Mass spectrometry (6)
HDMSE (6)
Affinity proteomics (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Metaproteomics (3)
NMR spectroscopy (2)
All-ion fragmentation (2)
DiaPASEF (2)
Mass spectrometry imaging (2)
Proteogenomics (2)
SRM/MRM (2)

Instrument Platform

Q Exactive (10)
Instrument (7)
LTQ Orbitrap Velos (7)
Orbitrap Fusion Lumos (7)
Q Exactive Plus (6)
Orbitrap Exploris 480 (4)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - negative - reverse phase (3)
Orbitrap Eclipse (2)
Orbitrap Fusion (2)
Orbitrap Fusion ETD (2)
Q Exactive HF (2)
Q Exactive HF-X (2)
QExactive (2)
TOF/TOF 5800 (2)
LTQ (2)
AB SOLiD 4 System (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
1200 series LC/MSD SL (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
Bruker Daltonics instrument model (1)
Impact (1)
LTQ FT (1)
LTQ Orbitrap (1)
Orbitrap Astral (1)
Q-Exactive (1)
QE-HF (1)
Synapt MS (1)

Publication Date

2024 (106)
2021 (101)
2022 (94)
2025 (87)
2020 (86)
2023 (80)
2018 (70)
2026 (68)
2019 (63)
2015 (48)
2016 (40)
2017 (34)
2014 (12)
2013 (12)
2012 (10)
2008 (7)
2010 (6)
2011 (5)
2009 (1)
2006 (1)

UNIPROT ID/AC

9544.ENSMMUP00000000740 (19)
9544.ENSMMUP00000001377 (19)
9544.ENSMMUP00000001769 (19)
9544.ENSMMUP00000001915 (19)
9544.ENSMMUP00000002527 (19)
9544.ENSMMUP00000002781 (19)
9544.ENSMMUP00000003585 (19)
9544.ENSMMUP00000003611 (19)
9544.ENSMMUP00000004046 (19)
9544.ENSMMUP00000004823 (19)
9544.ENSMMUP00000005597 (19)
9544.ENSMMUP00000005753 (19)
9544.ENSMMUP00000005797 (19)
9544.ENSMMUP00000005910 (19)
9544.ENSMMUP00000006390 (19)
9544.ENSMMUP00000006423 (19)
9544.ENSMMUP00000007902 (19)
9544.ENSMMUP00000008373 (19)
9544.ENSMMUP00000008494 (19)
9544.ENSMMUP00000008956 (19)
9544.ENSMMUP00000009144 (19)
9544.ENSMMUP00000009462 (19)
9544.ENSMMUP00000009900 (19)
9544.ENSMMUP00000010357 (19)
9544.ENSMMUP00000010407 (19)
9544.ENSMMUP00000010774 (19)
9544.ENSMMUP00000010832 (19)
9544.ENSMMUP00000010920 (19)
9544.ENSMMUP00000011307 (19)
9544.ENSMMUP00000011868 (19)

CHEBI ID

CHEBI:17368 (5)
CHEBI:15428 (4)
CHEBI:25094 (3)
CHEBI:18186 (3)
CHEBI:17234 (3)
CHEBI:24898 (3)
CHEBI:25017 (3)
CHEBI:17568 (3)
CHEBI:27266 (3)
CHEBI:17750 (3)
CHEBI:16449 (3)
CHEBI:78320 (3)
CHEBI:16737 (3)
CHEBI:16199 (3)
CHEBI:16919 (3)
CHEBI:15354 (3)
CHEBI:17596 (3)
CHEBI:30769 (3)
CHEBI:73018 (2)
CHEBI:18222 (2)
CHEBI:24809 (2)
CHEBI:77131 (2)
CHEBI:50202 (2)
CHEBI:24266 (2)
CHEBI:24149 (2)
CHEBI:17626 (2)
CHEBI:15768 (2)
CHEBI:26493 (2)
CHEBI:28238 (2)
CHEBI:28635 (2)

Metabolite Name

Acetate (2)
L-Proline (2)
Choline (2)
Xanthine (2)
Creatinine (2)
L-Isoleucine (2)
L-Phenylalanine (2)
Hypoxanthine (2)
Daidzein 7-O-glucuronide (1)
Catechol glucuronide (1)
Hyodeoxycholate (1)
17beta-estradiol 3-sulfate (1)
Gmelinol (1)
Proquinazid (1)
Alpha-guaiaconic acid (1)
6-Methoxyflavone (1)
Sinapic aldehyde (1)
D-Limonene (1)
N-(2,4-dimethylphenyl)formamide (1)
5-Flurocytosine (1)
1,3-Dimethyl-2-imidazolidinon (1)
1-Hexylamine (1)
6-beta-hydroxylithocholate (1)
Beta-Lapachone (1)
2-hydroxy-butyrate (1)
2-methyl-butyrate (1)
Evoxine (1)
5,6-dihydroxyprostaglandin F1a (1)
20beta-dihydrocortisol (1)
Sunitinib (1)

First Public Date

2026 (5)
2024 (5)
2025 (3)
2022 (2)
2021 (2)
2020 (2)
2017 (2)
2015 (2)
2013 (2)
2023 (1)
2019 (1)
2018 (1)
2014 (1)

Modification

Not available (9)
15.994915 (3)
4-tetrahydrothiazine-3-carboxylic acid (3)
57.021464 (2)
-17.026549 (1)
-18.010565 (1)
0.984 (1)
15.99491 (1)
1x(15)N labeled L-valine (1)
42.010565 (1)
57.02146 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (9)
Proteomic profiling by array (4)
Transcription profiling by SAGE (2)
Proteomic profiling by mass spectrometer (1)
Transcription profiling by tiling array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (47)
2022 (45)
2014 (44)
2023 (41)
2015 (33)
2024 (30)
2016 (29)
2013 (28)
2025 (27)
2019 (25)
2020 (25)
2018 (25)
2012 (22)
2011 (21)
2008 (20)
2010 (18)
2017 (14)
2009 (11)
2006 (10)
2007 (8)
2026 (5)
2003 (3)
2004 (1)
2002 (1)
2000 (1)

Lab affiliation

Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (19)
Department of Molecular Biology and Endocrinology, “VINČA”, Institute of Nuclear Sciences - National Institute of thе Republic of Serbia, University of Belgrade, Belgrade, Serbia (4)
Helmholtz-Centre for Environmental Research - UFZ (4)
Aarhus University Hospital, Denmark (3)
Division of Genetic and Genomic Medicine, Department of Pediatrics, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA (3)
Executive Science Officer, BioFrontiers InstituteDistinguished ProfessorProfessor, Howard Hughes Medical Institute MOLECULAR CELLULAR AND DEVELOPMENTAL BIOLOGY CU DENVER SCHOOL OF MEDICINE (3)
MPIs for Brain Research and Biophysics (3)
Manchester Academic Health Science Centre, Division of Cell Matrix Biology & Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK (3)
ProCan®, Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead, NSW, Australia. (3)
Proteomics & Metabolomics Facility, Center for Open Research Resources & Equipment University of Connecticut Storrs, CT 06269 (3)
Research Unit for Molecular Medicine, Department of Clinical Medicine, Aarhus University, Denmark (3)
Texas Tech University (3)
1) Department Preclinical Development and Validation, Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany; 2) Institute for Bioanalysis, University of Applied Science Coburg, Coburg, Germany (2)
Associate Professor, School of Animal Sciences Core Faculty, School of Neuroscience Faculty of Health Sciences Vice Chair, Institutional Biosafety Committee (IBC) Virginia Tech (2)
Cell Biology, Faculty of Science, Utrecht University, TheNetherlands (2)
Cellzome, a GSK company (2)
Department of Chemistry and Biotechnology Tallinn University of Technology Estonia (2)
Department of Chemistry, Johns Hopkins University, Baltimore, Maryland, United States (2)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (2)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio (2)
Department of Pediatrics, University of Groningen, University Medical Center Groningen (UMCG), 9713 AV Groningen, The Netherlands (2)
Department of Pharmaceutical Sciences, School of Pharmacy and Pharmaceutical Sciences, University at Buffalo (2)
Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
Department of Thoracic Surgery, First Affiliated Hospital of Kunming Medical University, Kunming 650000, Yunnan, China. (2)
Departments of Biochemistry and Neurology Emory University School of Medicine (2)
Director of PEL @ Caltech (2)
Div. Clinical Protein Science & Imaging, Dept. of Clinical Sciences (Lund) and Dept. of Biomedical Engineering, Lund University, Lund, Sweden (2)
Foetal Exposure Group School of Clinical Sciences University of Bristol United Kingdom (2)
Institute of Physiology of the Czech Academy of Sciences Laboratory of Developmental Cardiology (2)
Maastricht MultiModal Molecular Imaging (M4I) Institute, Division of Imaging Mass Spectrometry, Maastricht University, Maastricht, The Netherlands (2)

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Transcriptome sequencing of naked mole rat, Heterocephalus glaber

Deep sequencing of mRNA from naked mole rat Analysis of ploy(A)+ RNA of different specimens: brain, kidney, liver from new born , 4 years old , 20 years old and 4 years old hypoxia-exposed naked mole rat

ORGANISM(S): Heterocephalus glaber

2011-10-12 | E-GEOD-30337 | biostudies-arrayexpress

Rat Bronchoalveolar Lavage Proteome Changes Following E-cigarette Aerosol Exposures

Label free quantitative proteomics of bronchoalveolar lavage (BAL) fluid collected from rats exposed to e-cigarette aerosols (humidified air control, PG/VG, PG/VG + Nicotine, or PG/VG + Nicotine + Vanillin)

ORGANISM(S): Rattus Norvegicus (ncbitaxon:10116)

2023-01-06 | MSV000091015 | MassIVE

High resolution methylome map of rat reveals role of intragenic DNA methylation in identifying coding region and alternative splice site.

We report the application of next generation sequencing technology for high-throughput profiling of cytosine methylation in adult rat liver tissue. To investigate the role of intragenic methylation, we generated the first high resolution methylation map of rat liver tissue and compared it with the p...

ORGANISM(S): Rattus norvegicus

2011-12-20 | E-GEOD-31571 | biostudies-arrayexpress

Optimization of HUNTER N-termini profiling using rat brain proteome extracts

Optimization hydrophobic tagging reaction time (30 min to 2h) and evaluation of the HUNTER protocol performance with different amounts (25 ug to 400 ug) of purified rat brain proteome as starting material.

ORGANISM(S): Rattus norvegicus (Rat)

2019-09-03 | PXD012844 | Pride

Wistar rat hunter n-termini

Transcription profiling and proteomic profiling of rat colon mucosa from rats fed quercetin

Quercetin has been shown to act as an anti-carcinogen in experimental colorectal cancer (CRC). The aim of the present study was to characterise transcriptome and proteome changes occurring in the distal colon mucosa of rats supplemented with 10 g quercetin/kg diet for 11 weeks. Transcriptome data an...

ORGANISM(S): Rattus norvegicus

2008-06-15 | E-GEOD-7479 | biostudies-arrayexpress

Characterization of the scavenger cell proteome in mouse and rat liver

The structural-functional organization of ammonia and glutamine metabolism in the liver acinus involves highly specialized hepatocyte subpopulations such as glutamine producing perivenous scavenger cells. However, it is still unclear whether this cell population is homogeneous and involves further s...

ORGANISM(S): Mus musculus (Mouse) Rattus norvegicus (Rat)

2021-08-05 | PXD023561 | Pride

Scavenger cells Glutamine synthetase Liver Liver zonation Subpopulation Hepatocyte Cell heterogeneity

Proteome profiling in aging rat brain by LC-MS/MS

This study investigated proteome profile in the hippocampus, medial prefrontal cortex (mPFC), and striatum of 14, 18, 23, and 27 months old rats in order to see the effect of aging on proteins in these regions. Using ultrahigh performance liquid chromatography coupled with Q Exactive HF Orbitrap mas...

ORGANISM(S): Rattus norvegicus (Rat)

2018-07-12 | PXD009212 | Pride

Aging Rat Brain Proteomics

rat bladder LC-MS/MS proteomics

Objective: Bladder outlet obstruction (BOO) is a common urologic disease associated with poorly understood molecular mechanisms. This study aimed to investigate the possible involvements of circRNAs (circular RNAs) and circRNA-encoded proteins in BOO development. Methods: The rat BOO model was esta...

ORGANISM(S): Rattus norvegicus (Rat)

2022-02-22 | PXD029337 | Pride

Rat Bladder Lc-ms/ms

Analysis of the rat hypothalamus proteome by data independent label-free liquid chromatography tandem mass spectrometry

Studies of neuronal, endocrine and metabolic disorders would be facilitated by characterization of the hypothalamus proteome. Protein extracts prepared from 16 whole rat hypothalami were measured by data independent label-free nanoflow liquid chromatography mass spectrometry (nLC-MSE). Peptide featu...

ORGANISM(S): Rattus norvegicus (Rat)

2012-08-22 | PXD000017 | Pride

Hypothalamus Rat Proteome

Rat Liver Phosphoproteome - An optimized platform for hydrophilic interaction chromatography-immobilized metal affinity chromatography enables deep coverage of the rat liver phosphoproteome

In depth analysis of rat liver phosphoproteome using optimized HILIC IMAC sample preparation

ORGANISM(S): Rattus rattus (Black rat)

2016-05-04 | PXD001372 | Pride

Phosphoproteome Rat Liver

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1478 Results

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