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ProteomicsA universal and cost-effective method for general and specific RNA-protein complex isolation_RBPome
The establishment of a protocol isolating specific RNPs by combining a total RNP isolation with an antisense probe-mediated specific RNP isolation
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2023-05-10 | PXD031578 | Pride
Arabidopsis thaliana Rbpome isolation Saps 
ProteomicsRBPome of primary human T helper cells
Post-transcriptional gene regulation is complex, dynamic and ensures proper T cell function. The targeted transcripts can simultaneously respond to various factors as evident for Icos, an mRNA regulated by several RNA binding proteins (RBPs), including Roquin. However, fundamental information about ...
ORGANISM(S): Homo sapiens (Human) 
2021-07-01 | PXD021164 | Pride
Human Rna interaction capture Rna binding proteins 
ProteomicsRBPome of primary mouse T helper cells
Post-transcriptional gene regulation by mRNA-binding proteins (RBPs) ensures an important layer to control protein outcome. It includes many fundamental processes, ranging from splicing to transport, decay and translation. Although recent technical developments allow the identification of mRNA-bindi...
ORGANISM(S): Mus musculus (Mouse) 
2021-07-01 | PXD008830 | Pride
Rbp Mrna interactome capture Immune cells 
ProteomicsRBPome of primary human T helper cells
Post-transcriptional gene regulation is complex, dynamic and ensures proper T cell function. The targeted transcripts can simultaneously respond to various factors as evident for Icos, an mRNA regulated by several RNA binding proteins (RBPs), including Roquin. However, fundamental information about ...
ORGANISM(S): Homo sapiens (Human) 
2021-07-01 | PXD021169 | Pride
Human Oops Rna binding proteins 
ProteomicsRBPome of primary mouse T helper cells
Post-transcriptional gene regulation is complex, dynamic and ensures proper T cell function. The targeted transcripts can simultaneously respond to various factors as evident for Icos, an mRNA regulated by several RNA binding proteins (RBPs), including Roquin. However, fundamental information about ...
ORGANISM(S): Mus musculus (Mouse) 
2021-07-01 | PXD022795 | Pride
Mouse Oops Rna binding proteins 
ProteomicsHARD-AP-drived RBPome in HEK293 cells, mouse brain and kidney without UV-crosslinking
Identification of RBPs proteome in HEK293 cells and adult mouse brain and kidney which were not treated with UV light before isolation with HARD beads.
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2024-08-26 | PXD053382 | Pride
Rbpome Hard-ap 
ProteomicsCAPRI RNA binding proteins and domains in Drosophila and Humans
In the current work, we present a comprehensive coverage of the RNA-binding protein (RBP) interactome of Drosophila at four levels of resolution. The highest level tackled in our study represents the RNA-protein complexes, which we address by combining formaldehyde crosslinking of Drosophila S2 cell...
ORGANISM(S): Homo sapiens (Human) Drosophila melanogaster (Fruit fly) 
2019-07-02 | PXD013338 | Pride
Rna crosslinked peptides Rna protein interaction 
ProteomicsA universal and cost-effective method for general and specific RNA-protein complex isolation_18S rRNP capture
the establishment of a protocol isolating specific RNPs by combining a total RNP isolation with an antisense probe-mediated specific RNP isolation
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2023-05-10 | PXD031573 | Pride
Saps-capture 18s rrnp capture Saccharomyces cerevisiae 
ProteomicsProteomic profiles of bona fide RNA-binding proteins across E. coli growth curve in M9LB media.
Dynamic interactions between RNA and RNA-binding proteins (RBPs) regulate a broad spectrum of bacterial functions. Here, we have characterised how the RBPome is dynamically rewired during the E. coli life cycle. We applied Orthogonal Organic Phase Separation (OOPS) coupled with an RNase digestion st...
ORGANISM(S): Escherichia coli 
2024-03-20 | PXD043373 | Pride
Tmt Rna-binding proteins Oops Bacterial growth curve 
ProteomicsThe nuclear RNA-interactome of human embryonic stem cells (hESCs)
Here, we performed RNA-interactome capture (RIC) on nuclear fractions from human embryonic stem cells (hESCs). The poly(A)+ RNA-bound proteome was determined by UV light-mediated cross-linking (CL) of RNAs to proteins in living cells, followed by nuclei isolation, oligo(dT) purification of poly(A)-R...
ORGANISM(S): Homo sapiens (Human) 
2023-05-05 | PXD025262 | Pride
Nuclear rna interactome Ric Hescs Rna-binding proteome Mass spectrometry Rbps Rna-binding proteins Rbpome Human embryonic stem cells Rna-interactome capture 
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