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TranscriptomicsSingle cell short- and long-read RNA-sequencing of iNeurons in Fragile-X and control cell-lines
This study benchmarks bulk and single-cell long-read RNA sequencing technologies in a human neuronal model of Fragile X syndrome. NGN2-induced neurons were generated from patient-derived iPSCs carrying a silenced FMR1 gene (FXS line E3) and an isogenic CRISPR-corrected rescue line (IsoB11) in which ...
ORGANISM(S): Homo sapiens 
2025-03-30 | E-MTAB-16805 | biostudies-arrayexpress
TranscriptomicsBulk short- and long-read RNA-sequencing of iNeurons in Fragile-X and control cell-lines
This study benchmarks bulk and single-cell long-read RNA sequencing technologies in a human neuronal model of Fragile X syndrome. NGN2-induced neurons were generated from patient-derived iPSCs carrying a silenced FMR1 gene (FXS line E3) and an isogenic CRISPR-corrected rescue line (IsoB11) in which ...
ORGANISM(S): Homo sapiens 
2026-03-25 | E-MTAB-16791 | biostudies-arrayexpress
GenomicsMaternal Influence on Exonic CpG Island Methylation in the Developing Hippocampus [Bisulfite-Seq]
Maternal 5-HT1A-receptor (R) is required for the timely development of the hippocampus and the establishment of emotional behaviors in Swiss-Webster (SW) mice. A partial and/or complete loss of maternal 5-HT1AR results in delayed ventral dentate granule cell (v-DGC) development and subsequent anxie...
ORGANISM(S): Mus musculus 
2013-02-04 | E-GEOD-35854 | biostudies-arrayexpress
ProteomicsIdentification and quantification of allele specific proteins and homeolog expression bias in an allopolyploid non-model crop by integrating transcriptomics and proteomics.
The fate of doubled genes, from allopolyploid or autopolyploid origin, is controlled at multiple levels within the central dogma: gene loss or silencing, neo- and/or sub functionalization, inter genomic transfer, allele dominance/co-dominance, differences in transcription/translation efficiency, pos...
ORGANISM(S): Musa acuminata subsp. malaccensis 
2018-01-29 | PXD006375 | Pride
Integration transcriptomics and proteomics Allele specificity Musa acuminata Non-model crop 
GenomicsPacbio Hifi sequencing of a naked mole-rat male subordinate kidney sample
Two PacBio Hifi sequencing runs from the kidney of a single male NMR sample used to make the mHetGla4.1.primary genome assembly. Specifically, we assembled a second NMR genome from an unrelated male of a separate captive colony in Toronto, Canada, using PacBio HiFi (155.8 Gb, read N50 = 11.45 Kb) an...
ORGANISM(S): Heterocephalus glaber 
2026-08-05 | E-MTAB-17313 | biostudies-arrayexpress
UnknownImproved reconstruction of transcripts and coding sequences from RNA-seq data.
Not available
S-EPMC12910111 | biostudies-literature
TranscriptomicsRNA-seq of Malassezia sympodialis
This data set is part of a study where the genome of Malassezia sympodialis (strain ATCC 42132) was sequenced using long-read technology and annotated using RNA-seq and proteogenomics. RNA was extracted at two different culture times (2 and 4 days). Seven RNA-seq libraries were prepared from indepen...
ORGANISM(S): Malassezia sympodialis 
2017-01-10 | E-MTAB-4589 | biostudies-arrayexpress
GenomicsPacbio Hifi sequencing of a male cape dune mole-rat kidney sample
One PacBio Hifi sequencing run from the kidney of a single male CDMR (Bathyergus suillus) sample used to make the mBatSui1.1.primary genome assembly as an evolutionary comparator to our telomere-to-telomere naked mole-rat genome assembly. Specifically, we assembled a CDMR from a wild-derived sample ...
ORGANISM(S): Bathyergus suillus 
2026-08-05 | E-MTAB-17312 | biostudies-arrayexpress
UnknownAdvancing animal tuberculosis surveillance using culture-independent long-read whole-genome sequencing.
Not available
S-EPMC10699144 | biostudies-literature
UnknownAbsence of p.R50X Pygm read-through in McArdle disease cellular models.
Not available
S-EPMC6994938 | biostudies-literature
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