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TranscriptomicsscRNAseq libraries of pooled kidney samples from wild type (ZF1) versus CRISPR-targeted renin knockout (ZF2) zebrafish
Libraries were made to compare the transcriptome of renin lineage cells (RLCs) from wild-type versus ren knockout zebrafish kidneys. RLCs were FAC sorted from pooled kidneys of ren+/+ or ren-/- zebrafish, which carried ren:RFP and acta2:EGFP reporter genes, allowing the isolation of renin-expressin...
ORGANISM(S): Danio rerio 
2022-06-10 | E-MTAB-11079 | biostudies-arrayexpress
ProteomicsPlatycodin D targeted proteomics
A proteomics work on Platycodin D targeting research
ORGANISM(S): Homo Sapiens 
2026-03-20 | PXD071858 |
TranscriptomicsTranscription profiling of two mesothelioma cell lines (MPP89 and REN), and of HMC-TERT non tumoral mesothelial cells
miRNA profile analysis of two mesothelioma cell lines (MPP89 and REN), and of HMC-TERT non tumoral mesothelial cells
ORGANISM(S): Homo sapiens 
2008-10-09 | E-MEXP-1699 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human mesothelioma cells MPP-89 REN compared to mesothelial cells HMC-TERT
gene expression profile of mesothelioma cells (MPP-89; REN) compared to mesothelial cells (HMC-TERT)
ORGANISM(S): Homo sapiens 
2008-10-09 | E-MEXP-1701 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human mesothelioma cells (MPP-89, REN) compared to mesothelial cells (HMC-TERT)
gene expression profiles of mesothelioma cells (MPP-89, REN) compared to mesothelial cells (HMC-TERT)
ORGANISM(S): Homo sapiens 
2008-10-09 | E-MEXP-1700 | biostudies-arrayexpress
TranscriptomicsTranscripts regulated by elevated DKF-2 (WT background)
Transcriptional profiling was used to determine why DKF-2 (protein kinase D) deficiency and surfeit caused hypersensitivity and resistance, respectively, to a bacterial pathogen (P. aeruginosa 14). The studies show that DKF-2 contributes to C. elegans innate immunity by inducing expression of >75 ge...
ORGANISM(S): Caenorhabditis elegans 
2009-01-12 | E-GEOD-12456 | biostudies-arrayexpress
TranscriptomicsVitamin D receptor expression and associated gene signature in tumor stromal fibroblasts predict clinical outcome in colorectal cancer
Colorectal cancer (CRC) is a major cause of cancer mortality and a serious health concern worldwide. Vitamin D deficiency is associated with high CRC incidence and mortality, suggesting a protective effect of vitamin D against this neoplasia. Although the antiproliferative and prodifferentiation act...
ORGANISM(S): Homo sapiens 
2016-04-07 | E-GEOD-70468 | biostudies-arrayexpress
TranscriptomicsDifferential effects of TNFalpha and IL1beta on FLS global gene expression profile
TNFalpha and IL1beta play a pathogenic role in rheumatoid arthritis. Both cytokines are known to activate cytokine and metalloproteinase secretion by synovial fibroblasts. In the present study, we wanted to investigate whether TNFalpha and IL1beta displayed differential effects on cultured Fibroblas...
ORGANISM(S): Homo sapiens 
2009-04-15 | E-GEOD-15615 | biostudies-arrayexpress
ProteomicsProteome profiling of cultivated Echerichia coli isolates from Crohn's disease patients
One of the dysbioses often observed in CD patients is an increased abundance of Escherichia coli (10-100 fold compared to healthy individuals) [Gevers et al., 2014]. E. coli isolates collected from CD and healthy patients were cultivated on LB medium at aerobic conditions up to medium log phase and...
ORGANISM(S): Escherichia coli 
2019-08-15 | PXD010920 | Pride
Crohn's disease Hplc-ms/ms Proteome E. coli 
TranscriptomicsV(D)J BCR single cell sequencing of mucosal pinch biopsies from patients with ulcerative colitis and primary sclerosing cholangitis concomitant with colitis
Mucosal pinch biopsies from ascending, transverse, descending colon and rectum were obtained from ulcerative colitis (UC) and primary sclerosing cholangitis concomitant with colitis (PSC-UC) patients during routine endoscopies and subjected to 5' single-cell RNA sequencing with V(D)J BCR analysis
ORGANISM(S): Homo sapiens 
2026-06-17 | E-MTAB-14901 | biostudies-arrayexpress
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