Ren M M - OmicsDI

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Unknown (9521)
Transcriptomics (550)
Proteomics (298)
Genomics (149)
Metabolomics (58)
Multiomics (8)
Genomic (2)
Other (1)

Organisms

Homo sapiens (395)
Mus musculus (202)
Drosophila melanogaster (40)
Caenorhabditis elegans (40)
Saccharomyces cerevisiae (25)
Rattus norvegicus (24)
Danio rerio (21)
Sus scrofa (18)
Arabidopsis thaliana (12)
Zea mays (9)
Pseudomonas putida (8)
Bos taurus (8)
Triticum aestivum (8)
Gallus gallus (7)
Drosophila simulans (6)
Salmo salar (6)
Actinoplanes sp. SE50/110 (6)
Escherichia coli (6)
Drosophila yakuba (5)
Schizosaccharomyces pombe (5)
Drosophila pseudoobscura (4)
Daphnia magna (4)
Pseudomonas aeruginosa (4)
Aplysia californica (3)
Fusarium fujikuroi (2)
Lateolabrax japonicus (2)
Cucumis sativus (2)
Pan troglodytes (2)
Bacillus amyloliquefaciens (2)
Clostridioides difficile 630 (1)

Organisms

Escherichia coli (3)
Malassezia pachydermatis (1)
Pseudomonas aeruginosa UCBPP-PA14 (1)
Medicago truncatula (1)
Arabidopsis thaliana (1)
Saccharomyces cerevisiae (1)
Homo sapiens (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (646)
pride (223)
MetaboLights (57)
iProX (53)
EGA (42)
ENA (12)
MassIVE (10)
jPOST (6)
PeptideAtlas (4)
dbGaP (2)
EVA (1)
geo (1)
GNPS (1)
GPMDB (1)
LINCS (1)
PanoramaPublic (1)

Tissue

Cell culture (54)
Liver (15)
Epithelial cell (14)
Testis (12)
Leaf (10)
Brain (9)
Permanent cell line cell (9)
Plant cell (8)
Blood plasma (7)
Cell suspension culture (6)
Root (6)
Fibroblast (5)
Hepatocyte (5)
Others (4)
B cell (4)
Lung (4)
Macrophage (4)
Blood cell (3)
Blood serum (3)
Bone marrow (3)
Embryo (3)
Heart (3)
Kidney (3)
Oocyte (3)
Sperm (3)
Whole body (3)
Blood (2)
Embryonic stem cell (2)
Neuron of the forebrain (2)
Retina (2)

Disease

Disease free (9)
Breast cancer (4)
Colon cancer (3)
Normal (2)
Hepatocellular carcinoma (2)
Liver cancer (2)
Male infertility (2)
Pancreatic ductal adenocarcinoma (2)
Severe acute respiratory syndrome (2)
Hypertension (1)
Colon Cancer (1)
IRAK-4 Q293X mutation (1)
Primary nodular malignant melanoma (1)
Obesity (1)
Glioblastoma (1)
Colorectal adenocarcinoma (1)
Not Available (1)
Acute kidney tubular necrosis (1)
Adult hepatocellular carcinoma (1)
Alzheimer's disease 18 (1)
Ataxia telangiectasia (1)
COVID-19 (1)
Cervix carcinoma (1)
Cognitive disorder (1)
Crohn's disease (1)
Dehydration (1)
Demyelinating disease (1)
Diffuse large B-cell lymphoma activated B-cell type (1)
Diffuse large B-cell lymphoma germinal center B-cell type (1)
Fungal infectious disease (1)

Technology Type

Mass Spectrometry (223)
Shotgun proteomics (98)
Bottom-up proteomics (55)
Mass spectrometry (37)
Data-dependent acquisition (28)
Affinity purification coupled with mass spectrometry proteomics (21)
Data-independent acquisition (15)
Mass spectrometry assay (14)
Gel-based experiment (12)
Top-down proteomics (8)
SWATH MS (6)
NMR spectroscopy (5)
Affinity proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Proteogenomics (3)
Mass spectrometry imaging (2)
Olink affinity proteomics (2)
SRM/MRM (2)
ILLUMINA, Illumina HiSeq 2500, Illumina HumanMethylation450K, Illumina InfiniumCoreExome-24v1-1_A (1)
Fluorescence imaging (1)
Fluorescence intensity (1)
NMR spectroscopy assay (1)
All-ion fragmentation (1)

Instrument Platform

Illumina NovaSeq 6000 (37)
Illumina HiSeq 2500 (19)
NextSeq 500 (15)
Illumina HiSeq 2000 (7)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (6)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (6)
See manuscript (5)
Illumina HiSeq 1500 (5)
FastPrep‑24 homogenizer (MP Biomedicals) (4)
Ion Torrent Proton (4)
Illumina MiSeq (4)
Illumina HiSeq 4000 (4)
NextSeq 550 (3)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (2)
Bio-Rad T100 Thermocycler (2)
Other (2)
Illumina Genome Analyzer II (2)
NextSeq 2000 (2)
Dell Precision Tower 7910 workstation (1)
Affymetrix GCS3000 7G SCANNER (1)
GeneChip Hybridization Oveer 640 (1)
NextSeq 500, 75 bp single end lane (1)
Illumina NovaSeq 6000 sequencing platform (Illumina) (1)
HIVE computer cluster (1)
Single nuclei were captured using the 10x Genomics Chromium Controller. (1)
Turbidostat (1)
Axon Instruments GenePix 4000B scanner (1)
High resolution C. scanner (1)
Agilent High resolution C scanner (1)
Affymetrix Genechip scanner 3000 (1)

Publication Date

2010 (101)
2025 (89)
2014 (82)
2022 (63)
2013 (63)
2011 (61)
2026 (59)
2015 (59)
2021 (56)
2024 (51)
2012 (49)
2016 (45)
2023 (40)
2019 (34)
2020 (33)
2009 (32)
2008 (31)
2007 (17)
2018 (16)
2017 (13)
2006 (6)
2004 (2)
2005 (1)

UNIPROT ID/AC

A0A024R563 (4)
A0A0A0MSA7 (4)
A0MZ66 (4)
A5A3E0 (4)
A5YM69 (4)
A6ND36 (4)
A6NNZ2 (4)
B4DPR2 (4)
B4E3A4 (4)
B7Z2U2 (4)
B7Z9B7 (4)
B7ZME8 (4)
C9JM50 (4)
C9JSZ1 (4)
C9JZR2 (4)
D6RE86 (4)
E5RK69 (4)
E7ESL9 (4)
E7EVA0 (4)
E9PFZ2 (4)
E9PKC0 (4)
E9PRE2 (4)
H0Y2V6 (4)
H0Y5B0 (4)
H0Y5C6 (4)
H0YDQ8 (4)
H0YFY6 (4)
H0YM50 (4)
H7BXH2 (4)
H7BY16 (4)

ENSEMBL ID

ENSG00000170477 (4)
ENSG00000147251 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15354 (16)
CHEBI:15428 (14)
CHEBI:16919 (13)
CHEBI:16335 (12)
CHEBI:16737 (12)
CHEBI:28044 (12)
CHEBI:30769 (12)
CHEBI:15891 (11)
CHEBI:16811 (11)
CHEBI:17562 (11)
CHEBI:17750 (11)
CHEBI:22660 (11)
CHEBI:26271 (11)
CHEBI:32816 (11)
CHEBI:15603 (10)
CHEBI:15741 (10)
CHEBI:16027 (10)
CHEBI:16359 (10)
CHEBI:16449 (10)
CHEBI:16467 (10)
CHEBI:16708 (10)
CHEBI:17203 (10)
CHEBI:17596 (10)
CHEBI:18132 (10)
CHEBI:18237 (10)
CHEBI:18257 (10)
CHEBI:28300 (10)
CHEBI:7916 (10)
CHEBI:16040 (9)
CHEBI:16704 (9)

Metabolite Name

Creatinine (13)
Creatine (11)
Taurine (10)
Betaine (9)
Choline (9)
Citric acid (9)
Inosine (9)
L-Arginine (9)
L-Glutamine (9)
Phosphorylcholine (9)
Cytidine (8)
Guanosine (8)
L-Serine (8)
Linoleic acid (8)
Pyroglutamic acid (8)
Sucrose (8)
Adenine (7)
Adenosine (7)
Glycine (7)
Hypoxanthine (7)
L-Histidine (7)
L-Phenylalanine (7)
L-Proline (7)
L-Valine (7)
Ornithine (7)
Palmitic acid (7)
Uracil (7)
Uridine (7)
Xanthosine (7)
ADP (6)

First Public Date

2026 (5)
2014 (5)
2023 (1)
2018 (1)

Classification

bacteria (4)
fungi (1)

Modification

Not available (1)

Study type

Transcription profiling by array (241)
RNA-seq of coding RNA (123)
ChIP-seq (75)
ChIP-chip by tiling array (49)
Transcription profiling by tiling array (23)
Methylation profiling by high throughput sequencing (17)
ChIP-chip by array (16)
Methylation profiling by array (15)
Other (13)
RNA-seq of coding RNA from single cells (11)
RNA-seq of non coding RNA (11)
Comparative genomic hybridization by array (8)
RNA-seq of total RNA (5)
Unknown experiment type (4)
Cell line - One-color microarray (3)
Animal - High-throughput sequencing (3)
Genotyping by array (3)
Animal - One-color microarray (2)
Plant - High-throughput sequencing (2)
RIP-seq (2)
DNA-seq (2)
FAIRE-seq (1)
Transcription profiling by SAGE (1)
Baseline (1)
Human - Single-cell sequencing (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
4C (1)

Release Date

2025 (1657)
2024 (1260)
2022 (1236)
2023 (1191)
2021 (990)
2020 (661)
2019 (487)
2018 (425)
2017 (348)
2015 (316)
2016 (304)
2026 (243)
2014 (242)
2013 (154)
2012 (150)
2010 (149)
2011 (131)
2009 (73)
2008 (54)
2007 (32)
2006 (20)
2005 (13)
2004 (11)
2003 (6)
2002 (5)
2000 (4)
2001 (2)
1999 (2)

Lab affiliation

Professor and Director Center of Proteomic Analysis BGI-Shenzhen (4)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (4)
Beijing proteome research center (3)
Gansu Provincial Key Lab of Aridland Crop Science/ Gansu Agricultural University, Lanzhou, China (3)
Manchester Academic Health Science Centre, Division of Cell Matrix Biology & Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Science, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin 300071, China (3)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (2)
Agronomy College, Henan Agricultural University, China (2)
Cell matrix biology and regenerative medicine, School of biological sciences, University of manchester (2)
Clinical Laboratory of BGI Health, BGI-Shenzhen, Shenzhen 518083, China (2)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Department of Laboratory Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China. (2)
Department of Pharmacology, School of Basic Medical Sciences, Tianjin Medical University (2)
Hong Kong University of Science and Technology (2)
Hubei University of Medicine, Taihe Hospital (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Max Perutz Labs, Vienna BioCenter, University of Vienna Dr. Bohr-Gasse 9/5, 1030 Vienna, Austria (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
Shenzhen Center for Disease Control and Prevention (2)
State Key Laboratory for Innovation and Transformation of Luobing Theory; Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education, Chinese National Health Commission and Chinese Academy of Medical Sciences; Department of Cardiology, Qilu Hospital of Shandong University, Jinan, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China. (2)
State Key Laboratory of Reproductive Medicine and Offspring Health, Department of Histology and Embryology, Gusu School, Nanjing Medical University (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
The Second Affiliated Hospital Zhejiang University School of Medicine (2)
The Second Hospital of Dalian Medical University (2)
Tianjin Medical University Cancer Institute and Hospital (2)
Traditional Chinese Medicine Hospital Affiliated to Xinjiang Medical University (2)
Zhejiang University (2)

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Transcription profiling of human mesothelioma cells MPP-89 REN compared to mesothelial cells HMC-TERT

gene expression profile of mesothelioma cells (MPP-89; REN) compared to mesothelial cells (HMC-TERT)

ORGANISM(S): Homo sapiens

2008-10-09 | E-MEXP-1701 | biostudies-arrayexpress

Transcription profiling of human mesothelioma cells (MPP-89, REN) compared to mesothelial cells (HMC-TERT)

gene expression profiles of mesothelioma cells (MPP-89, REN) compared to mesothelial cells (HMC-TERT)

ORGANISM(S): Homo sapiens

2008-10-09 | E-MEXP-1700 | biostudies-arrayexpress

Transcription profiling of two mesothelioma cell lines (MPP89 and REN), and of HMC-TERT non tumoral mesothelial cells

miRNA profile analysis of two mesothelioma cell lines (MPP89 and REN), and of HMC-TERT non tumoral mesothelial cells

ORGANISM(S): Homo sapiens

2008-10-09 | E-MEXP-1699 | biostudies-arrayexpress

scRNAseq libraries of pooled kidney samples from wild type (ZF1) versus CRISPR-targeted renin knockout (ZF2) zebrafish

Libraries were made to compare the transcriptome of renin lineage cells (RLCs) from wild-type versus ren knockout zebrafish kidneys. RLCs were FAC sorted from pooled kidneys of ren+/+ or ren-/- zebrafish, which carried ren:RFP and acta2:EGFP reporter genes, allowing the isolation of renin-expressin...

ORGANISM(S): Danio rerio

2022-06-10 | E-MTAB-11079 | biostudies-arrayexpress

Mouse tumor cell SCC7/SCC7-M LC-MS

To identify the downstream targets of macrophages that mediate tumor metastasis, we first established a highly metastatic cell line, named SCC7-M, then we performed proteomics analysis using the tumor tissue from mice bearing SCC7 and SCC7-M tumors.

ORGANISM(S): Mus musculus (Mouse)

2024-05-24 | PXD048866 | Pride

DNA Cytosine Hydroxymethylation Levels Are Distinct Among Peripheral Blood Leukocytes

Peripheral blood leukocytes are the most commonly used surrogates to study epigenome-induced risk and epigenomic response to disease related stress. We considered the hypothesis that the TET enzyme catalyzed hydroxymethylation of 5mC to 5hmC might vary among peripheral blood leukocytes and reflect t...

ORGANISM(S): Homo sapiens

2016-07-05 | E-GEOD-70519 | biostudies-arrayexpress

Differential effects of TNFalpha and IL1beta on FLS global gene expression profile

TNFalpha and IL1beta play a pathogenic role in rheumatoid arthritis. Both cytokines are known to activate cytokine and metalloproteinase secretion by synovial fibroblasts. In the present study, we wanted to investigate whether TNFalpha and IL1beta displayed differential effects on cultured Fibroblas...

ORGANISM(S): Homo sapiens

2009-04-15 | E-GEOD-15615 | biostudies-arrayexpress

Subsets of visceral adipose tissue nuclei with discrete levels of 5-hydroxymethylcytosine

We explored the hypothesis that adipose tissue contains epigenetically distinct subpopulations of adipocytes that are differentially potentiated to record cellular memories of their environment. Adipocytes are large, fragile, and technically difficult to efficiently isolate and fractionate. We devel...

ORGANISM(S): Sus scrofa

2016-07-20 | E-GEOD-73684 | biostudies-arrayexpress

Transcriptome analysis of zones of colonies of the M-NM-^TflbA strain of Aspergillus niger

Gene expression was studied at the periphery, an intermediate zone, and the centre of wild-type and M-bM-^HM-^FflbA colonies using Affymetrix A. niger whole genome microarrays. We used Affymetrix GeneChip A. niger Geome Arrays and identifed up- and down-regulated genes that may account for the diffe...

ORGANISM(S): Aspergillus niger

2014-02-13 | E-GEOD-44391 | biostudies-arrayexpress

CcpA, a Pleiotropic Key Regulator in Butanol-producing Clostridium acetobutylicum ATCC 824

Clostridium acetobutylicum is a typical bacterium of major importance to industrial butanol production. In order to dissect the regulatory network pertaining to the industrial application of this bacterium, catabolite control protein A (CcpA) was investigated for its global function by DNA microarra...

ORGANISM(S): Clostridium acetobutylicum

2012-08-30 | E-GEOD-33364 | biostudies-arrayexpress

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10581 Results

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