Ritchie L L - OmicsDI

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Unknown (775)
Transcriptomics (204)
Proteomics (106)
Genomics (44)
Metabolomics (8)

Organisms

Homo sapiens (152)
Mus musculus (89)
Caenorhabditis elegans (11)
Arabidopsis thaliana (11)
Drosophila melanogaster (10)
Saccharomyces cerevisiae (9)
Pristionchus pacificus (8)
Sus scrofa (7)
Rattus norvegicus (7)
Escherichia coli (4)
Rhodospirillum rubrum (3)
Bos taurus (3)
Candida albicans (3)
Aplysia californica (2)
Theobroma cacao (2)
Danio rerio (2)
Scophthalmus maximus (1)
Meleagris gallopavo (1)
Eubalaena glacialis (1)
Aspergillus flavus (1)
Escherichia coli O157:H7 (1)
Aspergillus nidulans (1)
Schmidtea mediterranea (1)
Daphnia magna (1)
Streptomyces coelicolor A3(2) (1)
Streptomyces coelicolor (1)
Apis mellifera (1)
Zea mays (1)
Plasmodium falciparum 3D7 (1)
Mycobacterium tuberculosis (1)

Repository

biostudies-arrayexpress (208)
pride (105)
EGA (41)
MetaboLights (8)
PeptideAtlas (1)

Tissue

Cell culture (36)
Epithelial cell (7)
Heart (5)
Permanent cell line cell (5)
C2C12 cell (4)
Embryonic stem cell (4)
T cell (4)
Cell suspension culture (3)
Liver (3)
Lymph node (3)
Oocyte (3)
Blood serum (2)
Brain (2)
Colon (2)
Egg (2)
Endothelial cell (2)
Hepatocyte (2)
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Neuron (2)
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Testis (2)
Adult organism (1)
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Blood (1)
Blood cell (1)
Blood plasma (1)
Bone marrow (1)
Cardiocyte (1)
HEK-293T cell (1)
K-562 cell (1)

Disease

Acute leukemia (2)
Breast cancer (2)
Colon cancer (2)
Male infertility (2)
Melanoma (2)
RNAi_reagent (2)
IV (1)
Alveolar rhabdomyosarcoma (1)
Amyotrophic lateral sclerosis (1)
Aortic valve stenosis (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Chronic myeloid leukemia (1)
Colorectal cancer (1)
Embryonal rhabdomyosarcoma (1)
Endocervical adenocarcinoma (1)
Fascioliasis (1)
Glioblastoma (1)
Kidney cancer (1)
Liver carcinoma (1)
Lung cancer (1)
Lung carcinoma (1)
Lysosomal storage disease (1)
Obesity (1)
Pancreatic ductal adenocarcinoma (1)
Pre-eclampsia (1)
Rhabdomyosarcoma (1)

Technology Type

Mass Spectrometry (105)
Shotgun proteomics (60)
Affinity purification coupled with mass spectrometry proteomics (16)
Bottom-up proteomics (15)
Data-dependent acquisition (14)
Data-independent acquisition (11)
Mass spectrometry (7)
SWATH MS (6)
Gel-based experiment (5)
HumanOmniExpress-12 v1.1 BeadChip-GenCall (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HiSeq 2000 (ILLUMINA) (1)
ZCall, HumanExome_12v1.1_A -GenCall (1)
Mass spectrometry assay (1)
Mass spectrometry imaging (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 500 (5)
Illumina HiSeq 4000 (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - alternating - hilic (2)
IScan (Illumina) (1)
GeneChip IVT Labelling Kit (1)
Qiagen RNeasy Plant Mini Kit (1)
Affymetrix ATH1 Gene Chip (1)
Affymetrix GCS3000 (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
NextSeq 550 (1)
Illumina HiSeq 2000 (1)
GC-(triple quadrupole)MS, TQ8040, Shimadzu (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - positive - hilic (1)
MS Imaging - (1)
LTQ Orbitrap Velos (1)

Publication Date

2015 (35)
2013 (32)
2024 (29)
2012 (29)
2016 (21)
2010 (21)
2023 (20)
2026 (19)
2020 (18)
2022 (17)
2014 (16)
2011 (15)
2025 (13)
2021 (12)
2019 (7)
2018 (7)
2017 (5)
2009 (3)
2008 (3)

UNIPROT ID/AC

A0A5E1 (1)
A0ELI5 (1)
A0EQY3 (1)
A0JLQ7 (1)
A0JNY3 (1)
A0JNY7 (1)
A0MNP4 (1)
A0PJD7 (1)
A0PJL0 (1)
A0PK78 (1)
A0PK81 (1)
A1A553 (1)
A1A557 (1)
A1A558 (1)
A1A596 (1)
A1A5B6 (1)
A1E5T5 (1)
A1ILG8 (1)
A1L013 (1)
A1L0U3 (1)
A1L0U6 (1)
A1L0V6 (1)
A1L317 (1)
A1L329 (1)
A1L341 (1)
A1L347 (1)
A1L353 (1)
A1L361 (1)
A1L366 (1)
A1L3B6 (1)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:15891 (4)
CHEBI:16015 (4)
CHEBI:18050 (4)
CHEBI:28875 (4)
CHEBI:30915 (4)
CHEBI:32816 (4)
CHEBI:15428 (3)
CHEBI:15603 (3)
CHEBI:16196 (3)
CHEBI:16643 (3)
CHEBI:16708 (3)
CHEBI:16828 (3)
CHEBI:16857 (3)
CHEBI:17053 (3)
CHEBI:17196 (3)
CHEBI:17203 (3)
CHEBI:17234 (3)
CHEBI:17295 (3)
CHEBI:17368 (3)
CHEBI:17562 (3)
CHEBI:17596 (3)
CHEBI:17895 (3)
CHEBI:30769 (3)
CHEBI:30797 (3)
CHEBI:5445 (3)
CHEBI:7916 (3)
CHEBI:15354 (2)
CHEBI:15721 (2)
CHEBI:15729 (2)
CHEBI:15741 (2)

Metabolite Name

Glyceraldehyde (3)
(S)-malic acid (2)
2-oxoglutaric acid (2)
5-oxo-L-proline (2)
Adenine (2)
Choline (2)
Citric acid (2)
Cytidine (2)
Fumaric acid (2)
Glucose (2)
Glucose 6-phosphate (2)
Hypoxanthine (2)
Inosine (2)
L-Glutamine (2)
L-alanine (2)
L-asparagine (2)
L-aspartic acid (2)
L-glutamic acid (2)
L-glutamine (2)
L-isoleucine (2)
L-leucine (2)
L-methionine (2)
L-phenylalanine (2)
L-proline (2)
L-threonine (2)
L-tryptophan (2)
L-tyrosine (2)
L-valine (2)
N-acetyl-L-aspartic acid (2)
Taurine (2)

Study type

Transcription profiling by array (163)
RNA-seq of coding RNA (14)
MicroRNA profiling by array (4)
Methylation profiling by array (4)
Comparative genomic hybridization by array (3)
Other (3)
ChIP-seq (3)
RNA-seq of coding RNA from single cells (3)
RNA-seq of total RNA (3)
Genotyping by array (2)
RNA-seq of non coding RNA (2)
Plant - One-color microarray (1)
Human - One-color microarray (1)
ATAC-seq (1)

Release Date

2022 (101)
2025 (82)
2021 (81)
2023 (77)
2024 (72)
2015 (72)
2020 (62)
2016 (58)
2013 (57)
2019 (53)
2014 (49)
2017 (46)
2018 (41)
2012 (37)
2010 (30)
2011 (28)
2026 (15)
2009 (10)
2008 (8)
2007 (2)
2006 (1)
1999 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (17)
Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, SE-751 23 Uppsala, Sweden. (4)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid. (2)
Department of Gene Regulation Friedrich Miescher Institutefor Biomedical Research (2)
Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY (2)
Leibniz Institute on Aging, Fritz Lipmann Institute, Beutenbergstrasse 11, 07745 Jena, Germany (2)
Systems Biology Ireland, University College Dublin (2)
The University of Melbourne (2)
WEHI (2)
1. Garvan Institute of Medical Research, Cancer Ecosystems Program, and The Kinghorn Cancer Centre, Darlinghurst, Sydney, New South Wales, Australia. 2. School of Clinical Medicine, Faculty of Medicine and Health, University of New South Wales (UNSW), Kensington, Sydney, New South Wales, Australia. (1)
1Dept. of Pharmacology and Toxicology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR 72205 2Dept. of Environmental and Occupational Health, Fay W. Boozman College of Public Health, University of Arkansas for Medical Sciences, Little Rock, AR 72205 (1)
AbbVie Bioresearch Center (1)
Abiel Roche-Lima, MSc., PhD. Assistant Professor Director, Integrated Informatics Services core IIS-RCMI University of Puerto Rico Medical Science Campus RCMI Program PO Box 365067 San Juan, PR. 00936-5067 Phone: +1 787 758-2525 x 2194 (1)
Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Bioanalytical Research Labs, Department of Biosciences & Medical Biology, Universität Salzburg, Austria (1)
Brain Tumor Translational Targets B067 German Cancer Research Center (DKFZ) Im Neuenheimer Feld 580 69120 Heidelberg Germany Phone: +49 6221 42-4635 (1)
British Antarctic Survey High Cross, Madingley Rd, Cambridge, CB3 0ET (1)
Center for Inflammation Research, VIB, Ghent, Belgium (1)
Central European Institute of Technology, Proteomics core facility, Masaryk University, 625 00 Brno, Czech Republic (1)
Department of Analytical Chemistry, Faculty of Pharmacy inHradec Králové, Charles University, Heyrovského 1203/8, 500 03 Hradec Králové, Czech Republic (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine (1)
Department of Biosciences & Medical Biology, Paris Lodron University of Salzburg, Austria. (1)
Department of Cancer Biology, University of Kansas Medical Center, Kansas City, KS USA (1)
Department of Developmental Pathology, Institute of Pathology, University Hospital Bonn, 53127 Bonn, Germany (1)
Department of Developmental Pathology, Institute of Pathology, University Hospital Bonn, Germany (1)
Department of Gene Regulation Friedrich Miescher Institute for Biomedical Research (1)
Department of Immunology and Microbiology Institute of Biomedicine Sahlgrenska Academy University of Gothenburg (1)
Department of Medical Sciences, Institute of Biomedicine, University of Aveiro, 3810-193, Aveiro, Portugal (1)
Department of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, Cologne, Germany Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (1)

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TMT-based quantitative proteomic assessment of Vicia sativa induced neurotoxicity by β-cyano-L-alanine and γ-glutamyl-β-cyano-L-alanine in SH-SY5Y cells

β-Cyano-L-alanine (BCA) and γ-glutamyl-β-cyano-L-alanine (GBCA) are the primary antinutritional compounds in Vicia sativa, a high-protein, drought-tolerant legume. While neurotoxicity in monogastric animals has been observed, its molecular basis remains largely unknown. In this study, we optimised a...

ORGANISM(S): Homo sapiens (Human)

2026-01-19 | PXD067726 | Pride

The L-NAME mouse model of preeclampsia and impact to long-term maternal cardiovascular health.

Not available

S-EPMC9356384 | biostudies-literature

TMT-based quantitative proteomic assessment of Vicia sativa induced neurotoxicity by β-cyano-L-alanine and γ-glutamyl-β-cyano-L-alanine in SH-SY5Y cells.

Not available

S-EPMC12774881 | biostudies-literature

Proximity labeling in Arabidopsis seedlings expressing R-degron-Turbo vs. M-degron-Turbo vs. L-degron-Turbo untreated (DMSO control), treated with 10µM Bortezomib and treated with 1µM Concanamycin A.

Goal was to identify N-recognins for Arginine and Leucine by comparison of biotinylated proteins from 1 week old whole Arabidopsis seedlings constitutively expressing the bait constructs R-degron-Turbo or L-degron-Turbo. M-degron-Turbo served as a negative control. The plants were treated with 50µM ...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2024-04-15 | PXD041610 | Pride

Bortezomib N-degron pathway Proximity labeling Concanamycin a Protein turnover Turbo

Magnetically treated water for removal of surface contamination by Malathion on Chinese Kale (Brassica oleracea L.).

Not available

S-EPMC11101036 | biostudies-literature

Synthesis of high surface area mesoporous ZnCl₂-activated cocoa (Theobroma cacao L) leaves biochar derived via pyrolysis for crystal violet dye removal.

Not available

S-EPMC9547206 | biostudies-literature

Cost-effectiveness of Crohn's disease post-operative care.

Not available

S-EPMC4814750 | biostudies-literature

Gene expression analysis of mtDNA-depleted (Rho) mouse embryonic fibroblasts

Genome-wide transcriptional profiles of parental and mtDNA-depleted mouse embryonic fibroblasts. Analysis revealed a downregulation of ChrM genes. Mcl1 knockout mouse embryonic fibroblasts (transformed with SV40 large T antigen) were cultured for 7 days with Ethidium Bromide (100 ng/mL) in DMEM supp...

ORGANISM(S): Mus musculus

2014-11-03 | E-GEOD-59972 | biostudies-arrayexpress

Inheritance of pre-emergent metribuzin tolerance and putative gene discovery through high-throughput SNP array in wheat (Triticum aestivum L.).

Not available

S-EPMC6821039 | biostudies-literature

Polycythemia Vera: An Appraisal of the Biology and Management 10 Years After the Discovery of JAK2 V617F.

Not available

S-EPMC4979103 | biostudies-literature

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