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ProteomicsQuantitative proteomic profiling of Arabidopsis nuclei reveals accumulation of nucleolar proteins after a prolonged heat stress
Heat stress (HS) impacts the nuclear proteome and, subsequently, protein activities in the nucleoplasm and/or different nuclear compartments. In Arabidopsis thaliana, a short exposure to 37°C leads to the loss of the standard tripartite architecture of the nucleolus, the most prominent nuclear subst...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-10-17 | PXD045038 | Pride
Nanolc-msms Heat stress Nucleolus Nucleus 
ProteomicsHuman N-terminal proteome using TMPP labelling and dN-TOP approach
The present study describes the free N-terminome analysis of human mitochondria-enriched samples using trimethoxyphenylphosphonium (TMPP) labelling approaches and dN-TOP validation of the proteomics data acquired with an Orbitrap mass spectrometer. The doublet N-terminal oriented proteomics (dN-TOP)...
ORGANISM(S): Homo sapiens (Human) 
2026-03-23 | PXD064426 | Pride
Dn-top approach Free n-terminome analysis Human mitochondria 
ProteomicsProMetIS: deep phenotyping of mouse models by proteomics and metabolomics.
We develop new tools enabling high-throughput and combined proteomics and metabolomics data analysis. The tools are validated on two knockout mice models (LAT (Linker For Activation Of T-Cells) and Mx2 KO mice) generated and phenotyped by the PHENOMIN infrastructure.
ORGANISM(S): Mus musculus (Mouse) 
2021-11-18 | PXD028416 | Pride
Mice Liver Lc-ms/ms 
ProteomicsArabidopsis thaliana-Actinacidiphila interaction
How bacteria from the microbiota modulate the physiology of its host is an important question to address. Previous work revealed that the metabolic status of Arabidopsis thaliana was crucial for the specific recruitment of Streptomycetaceae into the microbiota. Here, the Arabidopsis-Actinacidiphila ...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-01-29 | PXD041221 | Pride
Arabidopsis thaliana Nanoacquity (waters) Q-exactive plus (thermo) Actinacidiphila 
ProteomicsHuman “free-N-terminome” analysis
The high throughput characterization of protein N-termini is becoming an emerging challenge in the proteomics and proteogenomics fields. The present study describes the N-terminal oriented analysis of human mitochondria enriched samples by the trimethoxyphenyl phosphonium (TMPP) labeling approach (N...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000080204 | MassIVE
MetabolomicsProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis

Genes are pleiotropic and getting a better knowledge of their function requires a comprehensive characterization of their mutants. Here, we generated multi-level data combining phenomic, proteomic and metabolomic acquisitions from plasma and liver tissues of two C57BL/6 N mouse models lacking the...

2021-09-01 | MTBLS1903 | MetaboLights
ProteomicsM.musculus - Plasma, SC (Imbertetal,scidata2021)
abundance based on Spectral counting, Interaction consistency score: 4.5, Coverage: 2
ORGANISM(S): 10090 
2021-00-00 | 8657263 | PAXDB
ProteomicsM.musculus - Liver, SC (Imbertetal,scidata2021)
abundance based on Spectral counting, Interaction consistency score: 15.1, Coverage: 10
ORGANISM(S): 10090 
2021-00-00 | 3188803864 | PAXDB
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